RBM6 | OmnibusX

I. Expression across cell types

Name	Number of supported studies	Average coverage
B cell	36 studies	29% ± 12%	Explore
endothelial cell	36 studies	39% ± 18%	Explore
fibroblast	24 studies	35% ± 17%	Explore
natural killer cell	23 studies	23% ± 8%	Explore
macrophage	22 studies	34% ± 20%	Explore
pericyte	22 studies	30% ± 16%	Explore
astrocyte	19 studies	49% ± 20%	Explore
naive B cell	17 studies	24% ± 5%	Explore
smooth muscle cell	17 studies	32% ± 13%	Explore
memory B cell	16 studies	23% ± 3%	Explore
microglial cell	15 studies	50% ± 14%	Explore
oligodendrocyte precursor cell	14 studies	45% ± 19%	Explore
CD8-positive, alpha-beta T cell	14 studies	23% ± 7%	Explore
oligodendrocyte	14 studies	43% ± 16%	Explore
regulatory T cell	14 studies	21% ± 6%	Explore
T cell	13 studies	28% ± 12%	Explore
mast cell	13 studies	33% ± 14%	Explore
ciliated cell	13 studies	36% ± 13%	Explore
CD4-positive, alpha-beta T cell	13 studies	23% ± 8%	Explore
plasmacytoid dendritic cell	13 studies	27% ± 8%	Explore
endothelial cell of lymphatic vessel	12 studies	38% ± 19%	Explore
glutamatergic neuron	12 studies	58% ± 25%	Explore
GABAergic neuron	11 studies	57% ± 23%	Explore
basal cell	11 studies	39% ± 21%	Explore
CD16-negative, CD56-bright natural killer cell, human	10 studies	23% ± 8%	Explore
CD16-positive, CD56-dim natural killer cell, human	10 studies	22% ± 6%	Explore
capillary endothelial cell	10 studies	24% ± 8%	Explore
gamma-delta T cell	10 studies	22% ± 11%	Explore
type I pneumocyte	9 studies	38% ± 16%	Explore
effector memory CD8-positive, alpha-beta T cell	9 studies	25% ± 9%	Explore
monocyte	9 studies	34% ± 17%	Explore
neuron	9 studies	45% ± 24%	Explore
epithelial cell	9 studies	45% ± 19%	Explore
myeloid cell	9 studies	38% ± 14%	Explore
plasma cell	9 studies	41% ± 18%	Explore
adipocyte	9 studies	67% ± 16%	Explore
dendritic cell	9 studies	41% ± 15%	Explore
endothelial cell of artery	8 studies	21% ± 6%	Explore
amacrine cell	8 studies	40% ± 10%	Explore
CD8-positive, alpha-beta memory T cell	8 studies	20% ± 4%	Explore
classical monocyte	7 studies	25% ± 10%	Explore
mature NK T cell	7 studies	23% ± 9%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	7 studies	25% ± 9%	Explore
retinal rod cell	7 studies	33% ± 16%	Explore
connective tissue cell	7 studies	28% ± 10%	Explore
myofibroblast cell	7 studies	32% ± 18%	Explore
club cell	7 studies	36% ± 17%	Explore
abnormal cell	6 studies	31% ± 16%	Explore
interneuron	6 studies	66% ± 19%	Explore
retinal ganglion cell	6 studies	45% ± 23%	Explore
precursor B cell	6 studies	27% ± 5%	Explore
retina horizontal cell	6 studies	37% ± 10%	Explore
retinal cone cell	6 studies	41% ± 9%	Explore
mesothelial cell	6 studies	43% ± 11%	Explore
mucosal invariant T cell	6 studies	24% ± 10%	Explore
vein endothelial cell	6 studies	34% ± 21%	Explore
Mueller cell	6 studies	43% ± 17%	Explore
type II pneumocyte	6 studies	46% ± 13%	Explore
leukocyte	6 studies	44% ± 17%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	5 studies	19% ± 6%	Explore
non-classical monocyte	5 studies	26% ± 9%	Explore
retinal bipolar neuron	5 studies	35% ± 10%	Explore
cardiac muscle cell	5 studies	49% ± 10%	Explore
lymphocyte	5 studies	41% ± 16%	Explore
respiratory goblet cell	5 studies	42% ± 16%	Explore
endothelial cell of vascular tree	5 studies	36% ± 22%	Explore
goblet cell	5 studies	34% ± 26%	Explore
secretory cell	4 studies	28% ± 9%	Explore
plasmablast	4 studies	35% ± 15%	Explore
granule cell	4 studies	45% ± 11%	Explore
progenitor cell	4 studies	33% ± 11%	Explore
immature B cell	4 studies	32% ± 9%	Explore
retinal pigment epithelial cell	4 studies	45% ± 26%	Explore
OFF-bipolar cell	4 studies	33% ± 9%	Explore
ON-bipolar cell	4 studies	35% ± 12%	Explore
T follicular helper cell	4 studies	17% ± 1%	Explore
hepatocyte	4 studies	64% ± 21%	Explore
muscle cell	4 studies	41% ± 27%	Explore
brush cell	4 studies	27% ± 5%	Explore
enteroendocrine cell	4 studies	26% ± 10%	Explore
transit amplifying cell	4 studies	38% ± 33%	Explore
CD4-positive, alpha-beta memory T cell	3 studies	19% ± 3%	Explore
conventional dendritic cell	3 studies	38% ± 20%	Explore
exhausted T cell	3 studies	22% ± 7%	Explore
glomerular endothelial cell	3 studies	18% ± 1%	Explore
renal beta-intercalated cell	3 studies	34% ± 17%	Explore
GABAergic interneuron	3 studies	54% ± 2%	Explore
differentiation-committed oligodendrocyte precursor	3 studies	40% ± 15%	Explore
glial cell	3 studies	38% ± 3%	Explore
pro-B cell	3 studies	23% ± 3%	Explore
mononuclear phagocyte	3 studies	41% ± 4%	Explore
GABAergic amacrine cell	3 studies	50% ± 4%	Explore
glycinergic amacrine cell	3 studies	40% ± 7%	Explore
rod bipolar cell	3 studies	33% ± 8%	Explore
germinal center B cell	3 studies	36% ± 9%	Explore
effector memory CD4-positive, alpha-beta T cell	3 studies	22% ± 8%	Explore
innate lymphoid cell	3 studies	29% ± 12%	Explore
cholangiocyte	3 studies	64% ± 7%	Explore
ependymal cell	3 studies	68% ± 12%	Explore
adventitial cell	3 studies	28% ± 9%	Explore
alveolar macrophage	3 studies	54% ± 10%	Explore
chondrocyte	3 studies	40% ± 13%	Explore
group 3 innate lymphoid cell	3 studies	23% ± 8%	Explore
T-helper 17 cell	3 studies	16% ± 1%	Explore
double negative thymocyte	3 studies	28% ± 12%	Explore
effector memory CD8-positive, alpha-beta T cell, terminally differentiated	3 studies	28% ± 10%	Explore
mural cell	3 studies	51% ± 14%	Explore
mucus secreting cell	3 studies	48% ± 15%	Explore

II. Expression across tissues

Name	Number of supported studies	Average coverage
brain	18 studies	51% ± 20%	Explore
lung	12 studies	32% ± 13%	Explore
eye	9 studies	37% ± 19%	Explore
peripheral blood	8 studies	24% ± 11%	Explore
heart	5 studies	42% ± 12%	Explore
kidney	5 studies	32% ± 15%	Explore
intestine	5 studies	22% ± 8%	Explore
liver	4 studies	43% ± 17%	Explore
adipose	4 studies	49% ± 27%	Explore
lymph node	3 studies	19% ± 2%	Explore

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
bladder	100%	15220.52	21 / 21	100%	36.93	504 / 504
prostate	100%	23247.47	245 / 245	100%	40.80	502 / 502
thymus	100%	19169.56	653 / 653	100%	43.17	605 / 605
uterus	100%	21146.67	170 / 170	100%	38.58	459 / 459
esophagus	100%	14672.91	1444 / 1445	100%	21.52	183 / 183
breast	100%	13175.15	459 / 459	100%	36.12	1116 / 1118
adrenal gland	100%	14211.73	258 / 258	100%	29.04	229 / 230
pancreas	100%	9049.98	328 / 328	99%	36.54	177 / 178
lung	100%	15366.21	578 / 578	99%	29.54	1148 / 1155
intestine	100%	16521.50	966 / 966	99%	28.39	523 / 527
stomach	100%	11013.31	359 / 359	99%	25.31	283 / 286
skin	100%	9041.22	1807 / 1809	99%	32.07	466 / 472
liver	100%	8091.34	226 / 226	99%	18.16	400 / 406
kidney	100%	12383.21	89 / 89	98%	26.13	885 / 901
brain	98%	8038.89	2594 / 2642	100%	51.42	705 / 705
ovary	100%	19912.57	180 / 180	97%	21.45	417 / 430
adipose	100%	12174.66	1204 / 1204	0%	0	0 / 0
lymph node	0%	0	0 / 0	100%	62.75	29 / 29
spleen	100%	23378.26	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	26.07	45 / 45
ureter	0%	0	0 / 0	100%	43.46	1 / 1
blood vessel	100%	12749.74	1332 / 1335	0%	0	0 / 0
heart	100%	8158.55	858 / 861	0%	0	0 / 0
muscle	98%	5152.69	789 / 803	0%	0	0 / 0
peripheral blood	91%	6513.98	844 / 929	0%	0	0 / 0
eye	0%	0	0 / 0	83%	16.29	66 / 80
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0

IV. Literature review

[source]

Gene name	RBM6
Protein name	RNA binding motif protein 6 RNA-binding protein 6 (Lung cancer antigen NY-LU-12) (Protein G16) (RNA-binding motif protein 6) (RNA-binding protein DEF-3)
Synonyms	DEF3
Description	FUNCTION: Specifically binds poly(G) RNA homopolymers in vitro.
Accessions	ENST00000443081.5 ENST00000446471.1 E9PGM9 C9JSL1 F8WF63 ENST00000442092.5 [P78332-2] ENST00000438912.1 ENST00000425608.5 [P78332-3] F8WCA5 ENST00000433811.1 ENST00000454079.5 C9J250 ENST00000266022.9 [P78332-1] C9JII0 ENST00000421682.1 C9JMC8 P78332 ENST00000422955.5 [P78332-2] ENST00000434592.5 ENST00000419610.5 F8WCT0

GO_0000398	Biological process	mRNA splicing, via spliceosome
GO_0006396	Biological process	RNA processing
GO_0005634	Cellular component	nucleus
GO_0003677	Molecular function	DNA binding
GO_0005515	Molecular function	protein binding
GO_0003723	Molecular function	RNA binding

RBM6 report

I. Expression across cell types

II. Expression across tissues

III. Associated gene sets

IV. Literature review