Name | Number of supported studies | Average coverage | |
---|---|---|---|
lung | 20 studies | 31% ± 13% | |
brain | 16 studies | 35% ± 17% | |
kidney | 10 studies | 26% ± 7% | |
eye | 10 studies | 32% ± 18% | |
intestine | 9 studies | 27% ± 14% | |
peripheral blood | 6 studies | 24% ± 6% | |
heart | 6 studies | 26% ± 5% | |
uterus | 5 studies | 32% ± 16% | |
adipose | 5 studies | 30% ± 13% | |
prostate | 5 studies | 35% ± 12% | |
breast | 5 studies | 25% ± 8% | |
liver | 5 studies | 37% ± 18% | |
pancreas | 4 studies | 64% ± 21% | |
placenta | 4 studies | 51% ± 19% | |
esophagus | 4 studies | 37% ± 24% | |
skin | 4 studies | 29% ± 5% | |
stomach | 3 studies | 34% ± 20% | |
thymus | 3 studies | 25% ± 6% | |
bone marrow | 3 studies | 25% ± 12% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 8238.73 | 1445 / 1445 | 100% | 144.67 | 183 / 183 |
lung | 100% | 10465.68 | 578 / 578 | 100% | 203.27 | 1155 / 1155 |
ovary | 100% | 6811.78 | 180 / 180 | 100% | 147.32 | 430 / 430 |
pancreas | 100% | 5860.48 | 328 / 328 | 100% | 164.42 | 178 / 178 |
stomach | 100% | 7538.60 | 359 / 359 | 100% | 163.57 | 286 / 286 |
breast | 100% | 9306.11 | 459 / 459 | 100% | 206.41 | 1117 / 1118 |
intestine | 100% | 8246.99 | 966 / 966 | 100% | 176.72 | 526 / 527 |
prostate | 100% | 7384.59 | 245 / 245 | 100% | 170.50 | 501 / 502 |
brain | 100% | 6732.64 | 2632 / 2642 | 100% | 162.02 | 705 / 705 |
bladder | 100% | 7530.52 | 21 / 21 | 100% | 175.23 | 502 / 504 |
uterus | 100% | 8152.00 | 170 / 170 | 100% | 173.45 | 457 / 459 |
kidney | 100% | 8819.89 | 89 / 89 | 100% | 165.85 | 897 / 901 |
thymus | 100% | 9466.94 | 653 / 653 | 100% | 159.94 | 602 / 605 |
skin | 100% | 9243.65 | 1809 / 1809 | 99% | 163.15 | 468 / 472 |
liver | 100% | 7398.65 | 226 / 226 | 99% | 122.18 | 402 / 406 |
adrenal gland | 100% | 10476.22 | 258 / 258 | 98% | 144.16 | 226 / 230 |
adipose | 100% | 10084.64 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 9799.40 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 114.15 | 29 / 29 |
spleen | 100% | 6379.46 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 141.32 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 89.20 | 1 / 1 |
muscle | 99% | 4473.81 | 797 / 803 | 0% | 0 | 0 / 0 |
heart | 99% | 6261.58 | 849 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 95% | 5426.98 | 885 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 95% | 97.72 | 76 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0060271 | Biological process | cilium assembly |
GO_0006897 | Biological process | endocytosis |
GO_0000045 | Biological process | autophagosome assembly |
GO_0090110 | Biological process | COPII-coated vesicle cargo loading |
GO_0030252 | Biological process | growth hormone secretion |
GO_0006886 | Biological process | intracellular protein transport |
GO_0032402 | Biological process | melanosome transport |
GO_0016192 | Biological process | vesicle-mediated transport |
GO_0007030 | Biological process | Golgi organization |
GO_0034446 | Biological process | substrate adhesion-dependent cell spreading |
GO_0019068 | Biological process | virion assembly |
GO_0032757 | Biological process | positive regulation of interleukin-8 production |
GO_0042742 | Biological process | defense response to bacterium |
GO_0090557 | Biological process | establishment of endothelial intestinal barrier |
GO_1903020 | Biological process | positive regulation of glycoprotein metabolic process |
GO_0006914 | Biological process | autophagy |
GO_0006888 | Biological process | endoplasmic reticulum to Golgi vesicle-mediated transport |
GO_0016477 | Biological process | cell migration |
GO_0047496 | Biological process | vesicle transport along microtubule |
GO_0012505 | Cellular component | endomembrane system |
GO_0005769 | Cellular component | early endosome |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005794 | Cellular component | Golgi apparatus |
GO_0000139 | Cellular component | Golgi membrane |
GO_0005783 | Cellular component | endoplasmic reticulum |
GO_0005829 | Cellular component | cytosol |
GO_0042470 | Cellular component | melanosome |
GO_0030658 | Cellular component | transport vesicle membrane |
GO_0045296 | Molecular function | cadherin binding |
GO_0003925 | Molecular function | G protein activity |
GO_0005525 | Molecular function | GTP binding |
GO_0005515 | Molecular function | protein binding |
GO_0003924 | Molecular function | GTPase activity |
Gene name | RAB1A |
Protein name | Ras-related protein Rab-1A (EC 3.6.5.2) (YPT1-related protein) Ras-related protein Rab-1A |
Synonyms | hCG_22592 RAB1 |
Description | FUNCTION: The small GTPases Rab are key regulators of intracellular membrane trafficking, from the formation of transport vesicles to their fusion with membranes . Rabs cycle between an inactive GDP-bound form and an active GTP-bound form that is able to recruit to membranes different sets of downstream effectors directly responsible for vesicle formation, movement, tethering and fusion . RAB1A regulates vesicular protein transport from the endoplasmic reticulum (ER) to the Golgi compartment and on to the cell surface, and plays a role in IL-8 and growth hormone secretion . Required to modulate the compacted morphology of the Golgi . Regulates the level of CASR present at the cell membrane . Plays a role in cell adhesion and cell migration, via its role in protein trafficking . Plays a role in autophagosome assembly and cellular defense reactions against pathogenic bacteria . Plays a role in microtubule-dependent protein transport by early endosomes and in anterograde melanosome transport (By similarity). . |
Accessions | ENST00000409784.8 [P62820-1] ENST00000409892.5 [P62820-2] ENST00000409751.1 Q5U0I6 E7END7 ENST00000649427.1 [P62820-1] ENST00000398529.7 [P62820-3] P62820 |