Name | Number of supported studies | Average coverage | |
---|---|---|---|
lung | 13 studies | 31% ± 12% | |
peripheral blood | 12 studies | 23% ± 6% | |
kidney | 7 studies | 25% ± 4% | |
intestine | 7 studies | 26% ± 10% | |
brain | 6 studies | 20% ± 5% | |
eye | 5 studies | 31% ± 14% | |
liver | 5 studies | 30% ± 21% | |
bone marrow | 4 studies | 17% ± 1% | |
uterus | 4 studies | 34% ± 19% | |
lymph node | 4 studies | 27% ± 10% | |
breast | 4 studies | 21% ± 5% | |
pancreas | 3 studies | 45% ± 18% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 485.50 | 1445 / 1445 | 100% | 23.35 | 183 / 183 |
ovary | 100% | 432.61 | 180 / 180 | 100% | 58.89 | 430 / 430 |
uterus | 100% | 397.06 | 170 / 170 | 99% | 19.69 | 453 / 459 |
stomach | 100% | 368.41 | 358 / 359 | 99% | 29.36 | 283 / 286 |
intestine | 100% | 435.11 | 966 / 966 | 98% | 28.31 | 518 / 527 |
thymus | 100% | 452.92 | 651 / 653 | 98% | 16.36 | 595 / 605 |
bladder | 100% | 416.81 | 21 / 21 | 98% | 20.62 | 492 / 504 |
prostate | 100% | 452.42 | 244 / 245 | 98% | 14.25 | 492 / 502 |
brain | 100% | 801.83 | 2641 / 2642 | 97% | 16.31 | 684 / 705 |
adrenal gland | 100% | 410.26 | 258 / 258 | 97% | 14.50 | 222 / 230 |
skin | 100% | 399.06 | 1809 / 1809 | 95% | 12.21 | 449 / 472 |
breast | 100% | 407.03 | 459 / 459 | 93% | 11.72 | 1043 / 1118 |
pancreas | 99% | 277.89 | 325 / 328 | 93% | 11.39 | 165 / 178 |
lung | 99% | 311.03 | 571 / 578 | 91% | 12.15 | 1056 / 1155 |
liver | 100% | 329.28 | 226 / 226 | 89% | 11.28 | 361 / 406 |
kidney | 100% | 479.12 | 89 / 89 | 86% | 9.91 | 772 / 901 |
eye | 0% | 0 | 0 / 0 | 100% | 14.34 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 17.29 | 29 / 29 |
spleen | 100% | 304.41 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 12.23 | 1 / 1 |
muscle | 100% | 694.41 | 802 / 803 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 424.40 | 1331 / 1335 | 0% | 0 | 0 / 0 |
adipose | 100% | 365.99 | 1199 / 1204 | 0% | 0 | 0 / 0 |
heart | 100% | 571.32 | 857 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 98% | 12.91 | 44 / 45 |
peripheral blood | 59% | 146.36 | 552 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006366 | Biological process | transcription by RNA polymerase II |
GO_0006367 | Biological process | transcription initiation at RNA polymerase II promoter |
GO_0001193 | Biological process | maintenance of transcriptional fidelity during transcription elongation by RNA polymerase II |
GO_0006283 | Biological process | transcription-coupled nucleotide-excision repair |
GO_0005730 | Cellular component | nucleolus |
GO_0005665 | Cellular component | RNA polymerase II, core complex |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0005515 | Molecular function | protein binding |
GO_0008270 | Molecular function | zinc ion binding |
GO_0003676 | Molecular function | nucleic acid binding |
GO_0003899 | Molecular function | DNA-directed 5'-3' RNA polymerase activity |
Gene name | POLR2I |
Protein name | RNA polymerase II subunit I DNA-directed RNA polymerase II subunit RPB9 (RNA polymerase II subunit B9) (DNA-directed RNA polymerase II subunit I) (RNA polymerase II 14.5 kDa subunit) (RPB14.5) |
Synonyms | |
Description | FUNCTION: Core component of RNA polymerase II (Pol II), a DNA-dependent RNA polymerase which synthesizes mRNA precursors and many functional non-coding RNAs using the four ribonucleoside triphosphates as substrates. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. POLR2I/RPB9 is part of the upper jaw surrounding the central large cleft and thought to grab the incoming DNA template. . |
Accessions | K7EKS1 K7EK49 K7ENX4 ENST00000221859.9 ENST00000586439.1 ENST00000585842.5 P36954 ENST00000592962.5 |