Name | Number of supported studies | Average coverage | |
---|---|---|---|
peripheral blood | 15 studies | 31% ± 11% | |
lung | 13 studies | 29% ± 12% | |
kidney | 7 studies | 21% ± 5% | |
brain | 7 studies | 30% ± 7% | |
liver | 6 studies | 25% ± 15% | |
intestine | 6 studies | 24% ± 9% | |
eye | 5 studies | 24% ± 8% | |
lymph node | 5 studies | 29% ± 6% | |
pancreas | 4 studies | 40% ± 13% | |
bone marrow | 4 studies | 25% ± 5% | |
breast | 4 studies | 23% ± 3% | |
placenta | 3 studies | 27% ± 3% | |
uterus | 3 studies | 40% ± 11% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 2106.73 | 1445 / 1445 | 100% | 54.85 | 183 / 183 |
ovary | 100% | 2208.48 | 180 / 180 | 100% | 77.42 | 430 / 430 |
prostate | 100% | 2102.78 | 245 / 245 | 100% | 74.39 | 502 / 502 |
stomach | 100% | 1707.92 | 359 / 359 | 100% | 71.96 | 286 / 286 |
uterus | 100% | 2248.20 | 170 / 170 | 100% | 76.50 | 459 / 459 |
brain | 100% | 2020.00 | 2641 / 2642 | 100% | 80.57 | 705 / 705 |
skin | 100% | 2411.19 | 1808 / 1809 | 100% | 89.00 | 472 / 472 |
breast | 100% | 2463.39 | 459 / 459 | 100% | 79.59 | 1117 / 1118 |
thymus | 100% | 2281.91 | 653 / 653 | 100% | 82.15 | 604 / 605 |
lung | 100% | 1929.86 | 577 / 578 | 100% | 68.84 | 1155 / 1155 |
intestine | 100% | 2351.19 | 966 / 966 | 100% | 76.10 | 526 / 527 |
bladder | 100% | 2361.76 | 21 / 21 | 100% | 82.90 | 503 / 504 |
kidney | 100% | 2407.52 | 89 / 89 | 100% | 55.33 | 899 / 901 |
pancreas | 100% | 1519.15 | 327 / 328 | 100% | 54.96 | 178 / 178 |
adrenal gland | 100% | 2361.31 | 258 / 258 | 100% | 69.95 | 229 / 230 |
liver | 100% | 1153.79 | 225 / 226 | 100% | 57.56 | 406 / 406 |
adipose | 100% | 2445.63 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 2912.03 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 110.20 | 29 / 29 |
spleen | 100% | 2095.83 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 62.94 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 52.17 | 1 / 1 |
muscle | 99% | 1500.22 | 797 / 803 | 0% | 0 | 0 / 0 |
heart | 98% | 1738.84 | 845 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 98% | 71.61 | 78 / 80 |
peripheral blood | 97% | 1927.62 | 903 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0030490 | Biological process | maturation of SSU-rRNA |
GO_0042274 | Biological process | ribosomal small subunit biogenesis |
GO_0005730 | Cellular component | nucleolus |
GO_0005694 | Cellular component | chromosome |
GO_0005739 | Cellular component | mitochondrion |
GO_0032040 | Cellular component | small-subunit processome |
GO_0005515 | Molecular function | protein binding |
GO_0003723 | Molecular function | RNA binding |
Gene name | NOL7 |
Protein name | Nucleolar protein 7 U3 small nucleolar RNA-associated protein NOL7 (U3 snoRNA-associated protein NOL7) (Nucleolar protein 7) (Nucleolar protein of 27 kDa) |
Synonyms | C6orf90 NOP27 |
Description | FUNCTION: Functions as part of the small subunit (SSU) processome, first precursor of the small eukaryotic ribosomal subunit that coordinates the first two steps of ribosome biogenesis in transcription of the primary transcript pre-RNA and pre-18S processing . During the assembly of the SSU processome in the nucleolus, many ribosome biogenesis factors, an RNA chaperone and ribosomal proteins associate with the nascent pre-rRNA and work in concert to generate RNA folding, modifications, rearrangements and cleavage as well as targeted degradation of pre-ribosomal RNA by the RNA exosome . This subunit is required for processing of the 5'-external transcribed spacer sequence (5'ETS) of the primary transcript pre-rRNA to yield the 18S rRNA . Also plays a role in maintaining early pre-rRNA levels, either by assisting in its transcription or stability . . |
Accessions | Q9UMY1 ENST00000420088.1 H7C2B1 ENST00000451315.7 [Q9UMY1-1] |