Name | Number of supported studies | Average coverage | |
---|---|---|---|
lung | 14 studies | 30% ± 12% | |
peripheral blood | 13 studies | 26% ± 8% | |
intestine | 8 studies | 23% ± 10% | |
kidney | 8 studies | 24% ± 4% | |
liver | 5 studies | 29% ± 18% | |
bone marrow | 4 studies | 20% ± 3% | |
brain | 4 studies | 23% ± 7% | |
pancreas | 3 studies | 30% ± 8% | |
eye | 3 studies | 24% ± 8% | |
adrenal gland | 3 studies | 20% ± 3% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
adrenal gland | 100% | 1986.98 | 258 / 258 | 100% | 81.29 | 230 / 230 |
esophagus | 100% | 1431.21 | 1445 / 1445 | 100% | 56.67 | 183 / 183 |
liver | 100% | 2057.14 | 226 / 226 | 100% | 172.20 | 406 / 406 |
ovary | 100% | 675.15 | 180 / 180 | 100% | 96.83 | 430 / 430 |
skin | 100% | 1528.21 | 1809 / 1809 | 100% | 123.07 | 472 / 472 |
thymus | 100% | 1225.37 | 653 / 653 | 100% | 99.07 | 605 / 605 |
uterus | 100% | 989.46 | 170 / 170 | 100% | 142.10 | 459 / 459 |
brain | 100% | 1223.25 | 2639 / 2642 | 100% | 86.64 | 705 / 705 |
pancreas | 100% | 1206.41 | 328 / 328 | 99% | 115.23 | 177 / 178 |
intestine | 100% | 1465.55 | 966 / 966 | 99% | 95.97 | 524 / 527 |
lung | 100% | 1426.06 | 578 / 578 | 99% | 100.59 | 1148 / 1155 |
stomach | 100% | 1456.99 | 359 / 359 | 99% | 83.73 | 284 / 286 |
breast | 100% | 1441.10 | 459 / 459 | 99% | 159.15 | 1110 / 1118 |
prostate | 100% | 1353.77 | 245 / 245 | 99% | 122.38 | 498 / 502 |
kidney | 100% | 1929.43 | 89 / 89 | 99% | 82.08 | 892 / 901 |
bladder | 100% | 1343.62 | 21 / 21 | 99% | 131.85 | 498 / 504 |
adipose | 100% | 1467.23 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 106.89 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 181.40 | 29 / 29 |
spleen | 100% | 1656.31 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 95.96 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 175.29 | 1 / 1 |
muscle | 100% | 1191.71 | 802 / 803 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 1213.61 | 1330 / 1335 | 0% | 0 | 0 / 0 |
heart | 99% | 1271.63 | 856 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 98% | 1405.63 | 915 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0001558 | Biological process | regulation of cell growth |
GO_0150116 | Biological process | regulation of cell-substrate junction organization |
GO_0010761 | Biological process | fibroblast migration |
GO_1902414 | Biological process | protein localization to cell junction |
GO_0043410 | Biological process | positive regulation of MAPK cascade |
GO_0071230 | Biological process | cellular response to amino acid stimulus |
GO_0008104 | Biological process | protein localization |
GO_1904263 | Biological process | positive regulation of TORC1 signaling |
GO_0032008 | Biological process | positive regulation of TOR signaling |
GO_0038202 | Biological process | TORC1 signaling |
GO_0031902 | Cellular component | late endosome membrane |
GO_0035579 | Cellular component | specific granule membrane |
GO_0005886 | Cellular component | plasma membrane |
GO_0070821 | Cellular component | tertiary granule membrane |
GO_0005770 | Cellular component | late endosome |
GO_0071986 | Cellular component | Ragulator complex |
GO_1990877 | Cellular component | FNIP-folliculin RagC/D GAP |
GO_0010008 | Cellular component | endosome membrane |
GO_0005765 | Cellular component | lysosomal membrane |
GO_0005085 | Molecular function | guanyl-nucleotide exchange factor activity |
GO_0060090 | Molecular function | molecular adaptor activity |
GO_0005515 | Molecular function | protein binding |
Gene name | LAMTOR2 |
Protein name | Ragulator complex protein LAMTOR2 (Endosomal adaptor protein p14) (Late endosomal/lysosomal Mp1-interacting protein) (Late endosomal/lysosomal adaptor and MAPK and MTOR activator 2) (Mitogen-activated protein-binding protein-interacting protein) (MAPBP-interacting protein) (Roadblock domain-containing protein 3) |
Synonyms | MAPBPIP HSPC003 ROBLD3 |
Description | FUNCTION: As part of the Ragulator complex it is involved in amino acid sensing and activation of mTORC1, a signaling complex promoting cell growth in response to growth factors, energy levels, and amino acids . Activated by amino acids through a mechanism involving the lysosomal V-ATPase, the Ragulator plays a dual role for the small GTPases Rag (RagA/RRAGA, RagB/RRAGB, RagC/RRAGC and/or RagD/RRAGD): it (1) acts as a guanine nucleotide exchange factor (GEF), activating the small GTPases Rag and (2) mediates recruitment of Rag GTPases to the lysosome membrane . Activated Ragulator and Rag GTPases function as a scaffold recruiting mTORC1 to lysosomes where it is in turn activated . Adapter protein that enhances the efficiency of the MAP kinase cascade facilitating the activation of MAPK2 (By similarity). . |
Accessions | ENST00000368302.3 [Q9Y2Q5-2] Q9Y2Q5 ENST00000368304.9 [Q9Y2Q5-3] ENST00000368305.9 [Q9Y2Q5-1] |