Name | Number of supported studies | Average coverage | |
---|---|---|---|
lung | 13 studies | 26% ± 13% | |
peripheral blood | 11 studies | 20% ± 4% | |
brain | 11 studies | 31% ± 15% | |
kidney | 7 studies | 18% ± 2% | |
liver | 4 studies | 39% ± 17% | |
intestine | 4 studies | 24% ± 8% | |
pancreas | 3 studies | 39% ± 15% | |
eye | 3 studies | 30% ± 4% | |
uterus | 3 studies | 32% ± 14% | |
bone marrow | 3 studies | 19% ± 4% | |
adipose | 3 studies | 18% ± 1% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 6628.10 | 1445 / 1445 | 100% | 153.73 | 183 / 183 |
lung | 100% | 6548.03 | 578 / 578 | 100% | 143.10 | 1155 / 1155 |
ovary | 100% | 5204.06 | 180 / 180 | 100% | 138.28 | 430 / 430 |
pancreas | 100% | 4370.65 | 328 / 328 | 100% | 132.67 | 178 / 178 |
stomach | 100% | 5440.88 | 359 / 359 | 100% | 179.53 | 286 / 286 |
uterus | 100% | 6282.06 | 170 / 170 | 100% | 133.04 | 459 / 459 |
breast | 100% | 6301.76 | 459 / 459 | 100% | 174.73 | 1117 / 1118 |
brain | 100% | 4927.81 | 2639 / 2642 | 100% | 119.04 | 705 / 705 |
intestine | 100% | 6877.56 | 966 / 966 | 100% | 177.65 | 526 / 527 |
bladder | 100% | 6858.81 | 21 / 21 | 100% | 147.54 | 503 / 504 |
prostate | 100% | 6035.99 | 245 / 245 | 100% | 131.13 | 501 / 502 |
liver | 100% | 6309.97 | 226 / 226 | 100% | 128.49 | 405 / 406 |
skin | 100% | 6712.28 | 1808 / 1809 | 100% | 135.41 | 471 / 472 |
kidney | 100% | 6862.56 | 89 / 89 | 100% | 120.51 | 898 / 901 |
thymus | 100% | 8793.93 | 653 / 653 | 100% | 141.31 | 602 / 605 |
adrenal gland | 100% | 6397.10 | 258 / 258 | 97% | 71.42 | 223 / 230 |
adipose | 100% | 6599.36 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 7787.97 | 1335 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 81.56 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 76.36 | 29 / 29 |
muscle | 100% | 5405.42 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 4263.82 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 104.34 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 58.85 | 1 / 1 |
peripheral blood | 98% | 4066.84 | 911 / 929 | 0% | 0 | 0 / 0 |
heart | 98% | 4227.63 | 842 / 861 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0046726 | Biological process | positive regulation by virus of viral protein levels in host cell |
GO_0099010 | Biological process | modification of postsynaptic structure |
GO_0098964 | Biological process | anterograde dendritic transport of messenger ribonucleoprotein complex |
GO_0045070 | Biological process | positive regulation of viral genome replication |
GO_0034599 | Biological process | cellular response to oxidative stress |
GO_0007281 | Biological process | germ cell development |
GO_1900273 | Biological process | positive regulation of long-term synaptic potentiation |
GO_0008298 | Biological process | intracellular mRNA localization |
GO_0000512 | Biological process | lncRNA-mediated post-transcriptional gene silencing |
GO_0035418 | Biological process | protein localization to synapse |
GO_0098978 | Cellular component | glutamatergic synapse |
GO_0005886 | Cellular component | plasma membrane |
GO_0016020 | Cellular component | membrane |
GO_0036464 | Cellular component | cytoplasmic ribonucleoprotein granule |
GO_0070062 | Cellular component | extracellular exosome |
GO_0043025 | Cellular component | neuronal cell body |
GO_0043005 | Cellular component | neuron projection |
GO_0030425 | Cellular component | dendrite |
GO_0005783 | Cellular component | endoplasmic reticulum |
GO_0005829 | Cellular component | cytosol |
GO_0005737 | Cellular component | cytoplasm |
GO_0044297 | Cellular component | cell body |
GO_1990124 | Cellular component | messenger ribonucleoprotein complex |
GO_0005791 | Cellular component | rough endoplasmic reticulum |
GO_0032839 | Cellular component | dendrite cytoplasm |
GO_0005875 | Cellular component | microtubule associated complex |
GO_0010494 | Cellular component | cytoplasmic stress granule |
GO_0003729 | Molecular function | mRNA binding |
GO_0008157 | Molecular function | protein phosphatase 1 binding |
GO_0003723 | Molecular function | RNA binding |
GO_0005515 | Molecular function | protein binding |
GO_0003725 | Molecular function | double-stranded RNA binding |
Gene name | STAU1 |
Protein name | Double-stranded RNA-binding protein Staufen homolog 1 STAU1 protein Staufen double-stranded RNA binding protein 1 |
Synonyms | STAU |
Description | FUNCTION: Binds double-stranded RNA (regardless of the sequence) and tubulin. May play a role in specific positioning of mRNAs at given sites in the cell by cross-linking cytoskeletal and RNA components, and in stimulating their translation at the site.; FUNCTION: (Microbial infection) Plays a role in virus particles production of many viruses including of HIV-1, HERV-K, ebola virus and influenza virus. Acts by interacting with various viral proteins involved in particle budding process. . |
Accessions | ENST00000347458.9 [O95793-2] Q6PJX3 ENST00000371828.7 [O95793-3] ENST00000371792.5 ENST00000371802.5 [O95793-3] Q5JW30 ENST00000456866.2 ENST00000360426.8 [O95793-2] ENST00000437404.2 Q5JW28 O95793 ENST00000340954.11 [O95793-2] ENST00000371856.7 [O95793-1] F6UDC6 |