Name | Number of supported studies | Average coverage | |
---|---|---|---|
peripheral blood | 14 studies | 25% ± 7% | |
lung | 10 studies | 27% ± 9% | |
brain | 9 studies | 34% ± 13% | |
intestine | 7 studies | 21% ± 11% | |
bone marrow | 6 studies | 21% ± 5% | |
liver | 5 studies | 26% ± 11% | |
kidney | 4 studies | 21% ± 2% | |
pancreas | 3 studies | 47% ± 18% | |
placenta | 3 studies | 20% ± 2% | |
uterus | 3 studies | 29% ± 14% | |
lymph node | 3 studies | 19% ± 3% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 6130.07 | 459 / 459 | 100% | 69.38 | 1118 / 1118 |
esophagus | 100% | 5201.06 | 1445 / 1445 | 100% | 67.87 | 183 / 183 |
intestine | 100% | 5397.99 | 966 / 966 | 100% | 54.54 | 527 / 527 |
lung | 100% | 6653.89 | 578 / 578 | 100% | 63.38 | 1155 / 1155 |
ovary | 100% | 6734.14 | 180 / 180 | 100% | 59.94 | 430 / 430 |
pancreas | 100% | 6901.36 | 328 / 328 | 100% | 39.36 | 178 / 178 |
prostate | 100% | 5589.86 | 245 / 245 | 100% | 64.35 | 502 / 502 |
brain | 100% | 4176.21 | 2639 / 2642 | 100% | 48.38 | 705 / 705 |
bladder | 100% | 5578.33 | 21 / 21 | 100% | 50.50 | 503 / 504 |
uterus | 100% | 7265.06 | 170 / 170 | 100% | 51.62 | 458 / 459 |
stomach | 100% | 4838.14 | 359 / 359 | 100% | 58.12 | 285 / 286 |
skin | 100% | 7740.62 | 1809 / 1809 | 100% | 72.74 | 470 / 472 |
liver | 100% | 6442.48 | 226 / 226 | 100% | 46.11 | 404 / 406 |
thymus | 100% | 6173.93 | 653 / 653 | 99% | 42.88 | 601 / 605 |
kidney | 100% | 4686.92 | 89 / 89 | 97% | 41.52 | 877 / 901 |
adrenal gland | 100% | 6922.97 | 258 / 258 | 97% | 37.18 | 223 / 230 |
adipose | 100% | 6345.50 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 6341.14 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 38.10 | 29 / 29 |
spleen | 100% | 6381.51 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 50.67 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 31.10 | 1 / 1 |
muscle | 99% | 2156.58 | 791 / 803 | 0% | 0 | 0 / 0 |
heart | 98% | 3597.98 | 847 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 96% | 36.31 | 77 / 80 |
peripheral blood | 96% | 5799.04 | 893 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0008284 | Biological process | positive regulation of cell population proliferation |
GO_0006613 | Biological process | cotranslational protein targeting to membrane |
GO_0005783 | Cellular component | endoplasmic reticulum |
GO_0016020 | Cellular component | membrane |
GO_0005789 | Cellular component | endoplasmic reticulum membrane |
GO_0005515 | Molecular function | protein binding |
Gene name | SSR1 |
Protein name | Translocon-associated protein subunit alpha (TRAP-alpha) (Signal sequence receptor subunit alpha) (SSR-alpha) Translocon-associated protein subunit alpha (TRAP-alpha) (Signal sequence receptor subunit alpha) |
Synonyms | TRAPA PSEC0262 |
Description | FUNCTION: TRAP proteins are part of a complex whose function is to bind calcium to the ER membrane and thereby regulate the retention of ER resident proteins. May be involved in the recycling of the translocation apparatus after completion of the translocation process or may function as a membrane-bound chaperone facilitating folding of translocated proteins. FUNCTION: TRAP proteins are part of a complex whose function is to bind calcium to the ER membrane and thereby regulate the retention of ER resident proteins. May be involved in the recycling of the translocation apparatus after completion of the translocation process or may function as a membrane-bound chaperone facilitating folding of translocated proteins. . FUNCTION: TRAP proteins are part of a complex whose function is to bind calcium to the ER membrane and thereby regulate the retention of ER resident proteins. May be involved in the recycling of the translocation apparatus after completion of the translocation process or may function as a membrane-bound chaperone facilitating folding of translocated proteins. . FUNCTION: TRAP proteins are part of a complex whose function is to bind calcium to the ER membrane and thereby regulate the retention of ER resident proteins. May be involved in the recycling of the translocation apparatus after completion of the translocation process or may function as a membrane-bound chaperone facilitating folding of translocated proteins. . FUNCTION: TRAP proteins are part of a complex whose function is to bind calcium to the ER membrane and thereby regulate the retention of ER resident proteins. May be involved in the recycling of the translocation apparatus after completion of the translocation process or may function as a membrane-bound chaperone facilitating folding of translocated proteins. . FUNCTION: TRAP proteins are part of a complex whose function is to bind calcium to the ER membrane and thereby regulate the retention of ER resident proteins. May be involved in the recycling of the translocation apparatus after completion of the translocation process or may function as a membrane-bound chaperone facilitating folding of translocated proteins. . FUNCTION: TRAP proteins are part of a complex whose function is to bind calcium to the ER membrane and thereby regulate the retention of ER resident proteins. May be involved in the recycling of the translocation apparatus after completion of the translocation process or may function as a membrane-bound chaperone facilitating folding of translocated proteins. . FUNCTION: TRAP proteins are part of a complex whose function is to bind calcium to the ER membrane and thereby regulate the retention of ER resident proteins. May be involved in the recycling of the translocation apparatus after completion of the translocation process or may function as a membrane-bound chaperone facilitating folding of translocated proteins. . |
Accessions | ENST00000244763.9 [P43307-1] C9IZQ1 C9J3L8 P43307 C9JY01 ENST00000479365.5 ENST00000650389.1 ENST00000474597.5 ENST00000489567.5 C9JBX5 A0A3B3IRT8 ENST00000462112.1 C9J5W0 ENST00000397511.6 E9PAL7 ENST00000479485.5 |