Name | Number of supported studies | Average coverage | |
---|---|---|---|
lung | 14 studies | 27% ± 8% | |
peripheral blood | 14 studies | 26% ± 7% | |
brain | 6 studies | 28% ± 6% | |
intestine | 6 studies | 21% ± 5% | |
liver | 4 studies | 24% ± 9% | |
pancreas | 3 studies | 38% ± 9% | |
placenta | 3 studies | 28% ± 5% | |
bone marrow | 3 studies | 21% ± 5% | |
breast | 3 studies | 19% ± 5% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 9537.14 | 459 / 459 | 100% | 346.23 | 1118 / 1118 |
lung | 100% | 13113.28 | 578 / 578 | 100% | 362.84 | 1155 / 1155 |
ovary | 100% | 7655.66 | 180 / 180 | 100% | 397.65 | 430 / 430 |
pancreas | 100% | 7211.36 | 328 / 328 | 100% | 287.20 | 178 / 178 |
prostate | 100% | 7964.83 | 245 / 245 | 100% | 362.43 | 502 / 502 |
stomach | 100% | 7288.77 | 359 / 359 | 100% | 296.63 | 286 / 286 |
uterus | 100% | 8889.54 | 170 / 170 | 100% | 414.88 | 459 / 459 |
skin | 100% | 10353.00 | 1808 / 1809 | 100% | 309.81 | 472 / 472 |
esophagus | 100% | 6726.95 | 1444 / 1445 | 100% | 291.67 | 183 / 183 |
thymus | 100% | 12240.42 | 653 / 653 | 100% | 323.92 | 604 / 605 |
intestine | 100% | 7772.96 | 966 / 966 | 100% | 325.81 | 526 / 527 |
bladder | 100% | 7230.57 | 21 / 21 | 100% | 346.78 | 503 / 504 |
liver | 100% | 9500.65 | 225 / 226 | 100% | 274.09 | 406 / 406 |
kidney | 100% | 8158.66 | 89 / 89 | 100% | 240.75 | 897 / 901 |
brain | 98% | 4643.47 | 2600 / 2642 | 100% | 200.17 | 705 / 705 |
adrenal gland | 100% | 9035.83 | 258 / 258 | 98% | 175.51 | 226 / 230 |
adipose | 100% | 9779.36 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 153.67 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 228.37 | 29 / 29 |
spleen | 100% | 9414.76 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 386.58 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 187.82 | 1 / 1 |
blood vessel | 100% | 7014.67 | 1333 / 1335 | 0% | 0 | 0 / 0 |
muscle | 100% | 5715.82 | 799 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 99% | 10280.32 | 919 / 929 | 0% | 0 | 0 / 0 |
heart | 98% | 6053.63 | 842 / 861 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0018279 | Biological process | protein N-linked glycosylation via asparagine |
GO_0006487 | Biological process | protein N-linked glycosylation |
GO_0008250 | Cellular component | oligosaccharyltransferase complex |
GO_0005783 | Cellular component | endoplasmic reticulum |
GO_0005829 | Cellular component | cytosol |
GO_0005791 | Cellular component | rough endoplasmic reticulum |
GO_0042470 | Cellular component | melanosome |
GO_0016020 | Cellular component | membrane |
GO_0005789 | Cellular component | endoplasmic reticulum membrane |
GO_0004579 | Molecular function | dolichyl-diphosphooligosaccharide-protein glycotransferase activity |
GO_0005515 | Molecular function | protein binding |
GO_0003723 | Molecular function | RNA binding |
Gene name | RPN1 |
Protein name | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 67 kDa subunit) (Ribophorin I) (RPN-I) (Ribophorin-1) |
Synonyms | |
Description | FUNCTION: Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol-pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation . N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across the endoplasmic reticulum (ER). All subunits are required for a maximal enzyme activity. . FUNCTION: Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol-pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation. N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across the endoplasmic reticulum (ER). All subunits are required for a maximal enzyme activity. . FUNCTION: Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol-pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation. N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across the endoplasmic reticulum (ER). All subunits are required for a maximal enzyme activity. . FUNCTION: Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol-pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation. N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across the endoplasmic reticulum (ER). All subunits are required for a maximal enzyme activity. . |
Accessions | ENST00000497289.5 P04843 F8WF32 ENST00000476931.1 ENST00000296255.8 Q6IBR0 B7Z4L4 |