RBIS report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
natural killer cell	29 studies	27% ± 8%	Explore
fibroblast	29 studies	31% ± 12%	Explore
B cell	27 studies	27% ± 8%	Explore
conventional dendritic cell	25 studies	33% ± 12%	Explore
CD8-positive, alpha-beta T cell	25 studies	29% ± 9%	Explore
endothelial cell	25 studies	31% ± 10%	Explore
CD4-positive, alpha-beta T cell	24 studies	29% ± 9%	Explore
macrophage	22 studies	24% ± 9%	Explore
classical monocyte	22 studies	32% ± 13%	Explore
smooth muscle cell	21 studies	30% ± 11%	Explore
T cell	20 studies	26% ± 6%	Explore
pericyte	20 studies	30% ± 9%	Explore
regulatory T cell	20 studies	29% ± 8%	Explore
plasmacytoid dendritic cell	19 studies	41% ± 14%	Explore
memory B cell	17 studies	29% ± 9%	Explore
non-classical monocyte	17 studies	29% ± 13%	Explore
mast cell	16 studies	26% ± 5%	Explore
basal cell	16 studies	33% ± 14%	Explore
plasma cell	15 studies	38% ± 13%	Explore
naive B cell	15 studies	29% ± 8%	Explore
connective tissue cell	15 studies	32% ± 10%	Explore
epithelial cell	15 studies	39% ± 20%	Explore
gamma-delta T cell	15 studies	30% ± 13%	Explore
endothelial cell of lymphatic vessel	14 studies	33% ± 10%	Explore
monocyte	14 studies	28% ± 9%	Explore
ciliated cell	13 studies	42% ± 16%	Explore
mature NK T cell	13 studies	27% ± 7%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	12 studies	32% ± 10%	Explore
myofibroblast cell	12 studies	34% ± 11%	Explore
CD16-positive, CD56-dim natural killer cell, human	11 studies	29% ± 10%	Explore
dendritic cell	11 studies	44% ± 27%	Explore
capillary endothelial cell	11 studies	24% ± 10%	Explore
vein endothelial cell	11 studies	28% ± 10%	Explore
CD8-positive, alpha-beta memory T cell	10 studies	26% ± 6%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	10 studies	31% ± 10%	Explore
CD16-negative, CD56-bright natural killer cell, human	10 studies	29% ± 8%	Explore
endothelial cell of artery	10 studies	23% ± 6%	Explore
mucosal invariant T cell	9 studies	26% ± 7%	Explore
plasmablast	8 studies	38% ± 18%	Explore
CD4-positive, alpha-beta memory T cell	8 studies	27% ± 9%	Explore
secretory cell	7 studies	35% ± 18%	Explore
leukocyte	7 studies	27% ± 5%	Explore
effector memory CD8-positive, alpha-beta T cell	7 studies	30% ± 10%	Explore
epithelial cell of proximal tubule	7 studies	23% ± 5%	Explore
progenitor cell	7 studies	38% ± 12%	Explore
abnormal cell	7 studies	37% ± 17%	Explore
mesothelial cell	7 studies	48% ± 17%	Explore
hematopoietic precursor cell	6 studies	35% ± 19%	Explore
club cell	6 studies	32% ± 9%	Explore
hematopoietic stem cell	6 studies	42% ± 14%	Explore
precursor B cell	6 studies	32% ± 11%	Explore
neuron	6 studies	33% ± 12%	Explore
T follicular helper cell	6 studies	27% ± 6%	Explore
endothelial cell of vascular tree	6 studies	30% ± 4%	Explore
exhausted T cell	5 studies	33% ± 14%	Explore
effector CD8-positive, alpha-beta T cell	5 studies	34% ± 15%	Explore
kidney loop of Henle epithelial cell	5 studies	23% ± 3%	Explore
enterocyte	5 studies	22% ± 3%	Explore
goblet cell	5 studies	26% ± 12%	Explore
pro-B cell	5 studies	29% ± 7%	Explore
myeloid cell	5 studies	34% ± 17%	Explore
type II pneumocyte	5 studies	35% ± 18%	Explore
effector memory CD4-positive, alpha-beta T cell	5 studies	29% ± 11%	Explore
enteroendocrine cell	4 studies	31% ± 6%	Explore
IgA plasma cell	4 studies	20% ± 6%	Explore
erythroblast	4 studies	41% ± 13%	Explore
adventitial cell	4 studies	20% ± 5%	Explore
erythrocyte	4 studies	43% ± 19%	Explore
muscle cell	4 studies	32% ± 12%	Explore
effector CD4-positive, alpha-beta T cell	4 studies	37% ± 10%	Explore
intermediate monocyte	4 studies	43% ± 19%	Explore
innate lymphoid cell	4 studies	27% ± 5%	Explore
luminal hormone-sensing cell of mammary gland	4 studies	24% ± 4%	Explore
oligodendrocyte precursor cell	4 studies	28% ± 8%	Explore
deuterosomal cell	3 studies	32% ± 8%	Explore
duct epithelial cell	3 studies	25% ± 6%	Explore
precursor cell	3 studies	49% ± 8%	Explore
respiratory goblet cell	3 studies	25% ± 5%	Explore
pancreatic A cell	3 studies	33% ± 9%	Explore
mononuclear phagocyte	3 studies	35% ± 8%	Explore
glomerular endothelial cell	3 studies	18% ± 1%	Explore
kidney distal convoluted tubule epithelial cell	3 studies	27% ± 5%	Explore
renal alpha-intercalated cell	3 studies	34% ± 5%	Explore
intestinal crypt stem cell	3 studies	29% ± 6%	Explore
neural crest cell	3 studies	34% ± 1%	Explore
IgG plasma cell	3 studies	21% ± 4%	Explore
placental villous trophoblast	3 studies	28% ± 9%	Explore
lymphocyte	3 studies	39% ± 10%	Explore
megakaryocyte	3 studies	29% ± 2%	Explore
immature B cell	3 studies	24% ± 6%	Explore
type I pneumocyte	3 studies	39% ± 16%	Explore
astrocyte	3 studies	22% ± 7%	Explore
retinal cone cell	3 studies	36% ± 9%	Explore
alveolar macrophage	3 studies	21% ± 2%	Explore
serous secreting cell	3 studies	38% ± 10%	Explore
acinar cell	3 studies	32% ± 15%	Explore
endothelial cell of sinusoid	3 studies	17% ± 1%	Explore
germinal center B cell	3 studies	28% ± 3%	Explore
CD4-positive helper T cell	3 studies	21% ± 5%	Explore
granulocyte	3 studies	32% ± 10%	Explore
granulocyte monocyte progenitor cell	3 studies	29% ± 9%	Explore
glial cell	3 studies	35% ± 17%	Explore
group 3 innate lymphoid cell	3 studies	38% ± 16%	Explore
melanocyte	3 studies	21% ± 3%	Explore
T-helper 17 cell	3 studies	22% ± 4%	Explore
central memory CD8-positive, alpha-beta T cell	3 studies	29% ± 11%	Explore
double negative thymocyte	3 studies	46% ± 17%	Explore
effector memory CD8-positive, alpha-beta T cell, terminally differentiated	3 studies	27% ± 8%	Explore
progenitor cell of mammary luminal epithelium	3 studies	27% ± 8%	Explore
hepatocyte	3 studies	36% ± 23%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
peripheral blood	16 studies	33% ± 11%	Explore
lung	14 studies	32% ± 15%	Explore
kidney	8 studies	26% ± 5%	Explore
intestine	8 studies	30% ± 12%	Explore
eye	6 studies	24% ± 4%	Explore
brain	6 studies	23% ± 4%	Explore
bone marrow	5 studies	25% ± 6%	Explore
liver	5 studies	31% ± 14%	Explore
pancreas	4 studies	32% ± 12%	Explore
placenta	4 studies	20% ± 4%	Explore
uterus	4 studies	39% ± 15%	Explore
lymph node	4 studies	30% ± 7%	Explore
breast	4 studies	24% ± 3%	Explore
esophagus	3 studies	37% ± 23%	Explore
thymus	3 studies	37% ± 14%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
esophagus	100%	1102.14	1445 / 1445	100%	17.95	183 / 183
ovary	100%	1320.33	180 / 180	100%	26.33	430 / 430
uterus	100%	1221.14	170 / 170	100%	14.60	459 / 459
breast	100%	1356.89	459 / 459	100%	17.08	1116 / 1118
bladder	100%	1164.00	21 / 21	100%	16.81	503 / 504
lung	100%	940.33	577 / 578	100%	15.71	1154 / 1155
prostate	100%	1155.02	245 / 245	99%	14.09	499 / 502
stomach	100%	1217.34	359 / 359	99%	18.63	284 / 286
pancreas	100%	950.91	328 / 328	99%	12.60	176 / 178
thymus	100%	1155.13	653 / 653	99%	11.88	597 / 605
brain	99%	550.47	2624 / 2642	99%	9.83	699 / 705
intestine	100%	1188.72	966 / 966	98%	15.83	518 / 527
adrenal gland	100%	1025.74	258 / 258	97%	9.46	224 / 230
liver	100%	642.15	225 / 226	97%	12.59	395 / 406
kidney	100%	979.92	89 / 89	96%	10.32	867 / 901
skin	100%	1058.02	1809 / 1809	91%	9.39	430 / 472
adipose	100%	1183.20	1204 / 1204	0%	0	0 / 0
lymph node	0%	0	0 / 0	100%	15.39	29 / 29
spleen	100%	1253.75	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	11.79	45 / 45
ureter	0%	0	0 / 0	100%	18.03	1 / 1
blood vessel	100%	1133.70	1334 / 1335	0%	0	0 / 0
muscle	99%	671.60	798 / 803	0%	0	0 / 0
heart	99%	863.21	854 / 861	0%	0	0 / 0
eye	0%	0	0 / 0	96%	15.46	77 / 80
peripheral blood	46%	534.67	428 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0