Name | Number of supported studies | Average coverage | |
---|---|---|---|
peripheral blood | 20 studies | 41% ± 13% | |
lung | 17 studies | 28% ± 12% | |
intestine | 8 studies | 23% ± 8% | |
lymph node | 5 studies | 34% ± 5% | |
kidney | 4 studies | 39% ± 14% | |
bone marrow | 4 studies | 27% ± 14% | |
uterus | 4 studies | 27% ± 10% | |
breast | 4 studies | 23% ± 8% | |
liver | 4 studies | 26% ± 10% | |
pancreas | 3 studies | 23% ± 8% | |
brain | 3 studies | 19% ± 1% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
kidney | 100% | 2973.11 | 89 / 89 | 100% | 114.32 | 900 / 901 |
intestine | 100% | 3471.50 | 966 / 966 | 99% | 151.30 | 524 / 527 |
stomach | 100% | 2274.95 | 359 / 359 | 99% | 123.10 | 282 / 286 |
thymus | 100% | 2318.56 | 652 / 653 | 99% | 88.47 | 596 / 605 |
lung | 100% | 4322.70 | 578 / 578 | 98% | 98.15 | 1133 / 1155 |
uterus | 100% | 2386.11 | 170 / 170 | 97% | 131.82 | 447 / 459 |
esophagus | 100% | 2085.22 | 1444 / 1445 | 97% | 79.29 | 178 / 183 |
skin | 100% | 2636.43 | 1808 / 1809 | 96% | 117.33 | 455 / 472 |
bladder | 100% | 2101.14 | 21 / 21 | 96% | 118.27 | 482 / 504 |
breast | 100% | 2986.51 | 459 / 459 | 95% | 84.66 | 1059 / 1118 |
ovary | 100% | 1615.70 | 180 / 180 | 95% | 85.91 | 407 / 430 |
liver | 100% | 2664.36 | 226 / 226 | 94% | 78.10 | 383 / 406 |
prostate | 100% | 2477.23 | 245 / 245 | 91% | 53.38 | 455 / 502 |
adrenal gland | 100% | 3620.41 | 258 / 258 | 87% | 46.30 | 201 / 230 |
pancreas | 77% | 797.25 | 251 / 328 | 97% | 93.55 | 172 / 178 |
brain | 71% | 666.28 | 1883 / 2642 | 84% | 49.26 | 589 / 705 |
adipose | 100% | 3150.06 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 325.68 | 29 / 29 |
spleen | 100% | 8128.12 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 137.69 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 23.30 | 1 / 1 |
peripheral blood | 100% | 7330.42 | 925 / 929 | 0% | 0 | 0 / 0 |
blood vessel | 99% | 1554.56 | 1315 / 1335 | 0% | 0 | 0 / 0 |
heart | 91% | 905.48 | 786 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 79% | 69.42 | 63 / 80 |
muscle | 33% | 244.25 | 268 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0019882 | Biological process | antigen processing and presentation |
GO_0052548 | Biological process | regulation of endopeptidase activity |
GO_0043161 | Biological process | proteasome-mediated ubiquitin-dependent protein catabolic process |
GO_0045444 | Biological process | fat cell differentiation |
GO_0000502 | Cellular component | proteasome complex |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005839 | Cellular component | proteasome core complex |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_0019774 | Cellular component | proteasome core complex, beta-subunit complex |
GO_1990111 | Cellular component | spermatoproteasome complex |
GO_0005634 | Cellular component | nucleus |
GO_0004175 | Molecular function | endopeptidase activity |
GO_0005515 | Molecular function | protein binding |
GO_0004298 | Molecular function | threonine-type endopeptidase activity |
Gene name | PSMB8 |
Protein name | Proteasome subunit beta Proteasome subunit beta type-8 (EC 3.4.25.1) (Low molecular mass protein 7) (Macropain subunit C13) (Multicatalytic endopeptidase complex subunit C13) (Proteasome component C13) (Proteasome subunit beta-5i) (Really interesting new gene 10 protein) Proteasome subunit beta type-8 Proteasome 20S subunit beta 8 (Proteasome subunit beta type-8) |
Synonyms | LMP7 Y2 PSM8 RING10 PSMB5i |
Description | FUNCTION: The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. This subunit is involved in antigen processing to generate class I binding peptides. Replacement of PSMB5 by PSMB8 increases the capacity of the immunoproteasome to cleave model peptides after hydrophobic and basic residues. Involved in the generation of spliced peptides resulting from the ligation of two separate proteasomal cleavage products that are not contiguous in the parental protein . Acts as a major component of interferon gamma-induced sensitivity. Plays a key role in apoptosis via the degradation of the apoptotic inhibitor MCL1. May be involved in the inflammatory response pathway. In cancer cells, substitution of isoform 1 (E2) by isoform 2 (E1) results in immunoproteasome deficiency. Required for the differentiation of preadipocytes into adipocytes. . FUNCTION: Component of the proteasome, a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. . FUNCTION: Component of the proteasome, a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. . |
Accessions | ENST00000425784.6 P28062 ENST00000452573.2 [P28062-2] ENST00000438442.6 [P28062-1] ENST00000421445.6 [P28062-1] A0A140T998 ENST00000455660.6 [P28062-1] ENST00000436627.2 [P28062-2] ENST00000374881.3 [P28062-2] ENST00000416564.2 [P28062-2] ENST00000427919.6 ENST00000441960.6 [P28062-2] ENST00000446762.6 ENST00000435978.6 [P28062-2] ENST00000416134.2 [P28062-2] ENST00000458543.2 ENST00000374882.8 [P28062-1] ENST00000429645.6 [P28062-1] ENST00000395339.7 Q5JNW7 ENST00000383236.8 [P28062-1] X5D2R7 ENST00000399630.7 ENST00000449883.2 ENST00000446855.6 ENST00000457261.6 [P28062-1] ENST00000383238.4 [P28062-2] Q6FHU0 ENST00000447073.6 |