Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
ovary | 100% | 3008.93 | 180 / 180 | 99% | 3.83 | 427 / 430 |
esophagus | 100% | 4240.21 | 1445 / 1445 | 99% | 3.16 | 181 / 183 |
stomach | 100% | 3288.43 | 359 / 359 | 98% | 3.46 | 279 / 286 |
lung | 100% | 5647.81 | 578 / 578 | 97% | 3.13 | 1123 / 1155 |
intestine | 100% | 4316.94 | 966 / 966 | 97% | 3.93 | 510 / 527 |
breast | 100% | 4995.59 | 459 / 459 | 92% | 2.20 | 1034 / 1118 |
pancreas | 98% | 2186.68 | 320 / 328 | 94% | 1.98 | 167 / 178 |
bladder | 100% | 3723.57 | 21 / 21 | 90% | 3.12 | 456 / 504 |
uterus | 100% | 3217.88 | 170 / 170 | 88% | 2.18 | 406 / 459 |
brain | 99% | 2966.82 | 2627 / 2642 | 79% | 1.78 | 555 / 705 |
prostate | 100% | 3221.31 | 245 / 245 | 75% | 1.42 | 379 / 502 |
adrenal gland | 100% | 5767.29 | 258 / 258 | 73% | 1.36 | 167 / 230 |
kidney | 100% | 3338.17 | 89 / 89 | 66% | 1.29 | 599 / 901 |
thymus | 100% | 3313.17 | 652 / 653 | 54% | 1.29 | 328 / 605 |
skin | 100% | 5122.43 | 1809 / 1809 | 54% | 0.94 | 253 / 472 |
liver | 100% | 3262.94 | 225 / 226 | 53% | 0.92 | 216 / 406 |
adipose | 100% | 5069.39 | 1204 / 1204 | 0% | 0 | 0 / 0 |
muscle | 100% | 8729.68 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 4867.39 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 1.34 | 1 / 1 |
blood vessel | 100% | 3749.30 | 1333 / 1335 | 0% | 0 | 0 / 0 |
heart | 99% | 4022.22 | 849 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 90% | 4658.83 | 837 / 929 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 87% | 1.85 | 39 / 45 |
lymph node | 0% | 0 | 0 / 0 | 86% | 2.43 | 25 / 29 |
eye | 0% | 0 | 0 / 0 | 68% | 1.25 | 54 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0050727 | Biological process | regulation of inflammatory response |
GO_0051092 | Biological process | positive regulation of NF-kappaB transcription factor activity |
GO_0051603 | Biological process | proteolysis involved in protein catabolic process |
GO_0043161 | Biological process | proteasome-mediated ubiquitin-dependent protein catabolic process |
GO_0000502 | Cellular component | proteasome complex |
GO_0019773 | Cellular component | proteasome core complex, alpha-subunit complex |
GO_0005840 | Cellular component | ribosome |
GO_0030016 | Cellular component | myofibril |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005634 | Cellular component | nucleus |
GO_0005654 | Cellular component | nucleoplasm |
GO_0000932 | Cellular component | P-body |
GO_0016363 | Cellular component | nuclear matrix |
GO_0030017 | Cellular component | sarcomere |
GO_0005829 | Cellular component | cytosol |
GO_0005737 | Cellular component | cytoplasm |
GO_0005839 | Cellular component | proteasome core complex |
GO_0004175 | Molecular function | endopeptidase activity |
GO_0003723 | Molecular function | RNA binding |
GO_0035639 | Molecular function | purine ribonucleoside triphosphate binding |
GO_0005515 | Molecular function | protein binding |
GO_0051059 | Molecular function | NF-kappaB binding |
Gene name | PSMA6 |
Protein name | Proteasome subunit alpha type-6 (27 kDa prosomal protein) (PROS-27) (p27K) (Macropain iota chain) (Multicatalytic endopeptidase complex iota chain) (Proteasome iota chain) Prosomal P27K protein Proteasome 20S subunit alpha 6 Proteasome subunit alpha type |
Synonyms | PROS27 |
Description | FUNCTION: Component of the 20S core proteasome complex involved in the proteolytic degradation of most intracellular proteins. This complex plays numerous essential roles within the cell by associating with different regulatory particles. Associated with two 19S regulatory particles, forms the 26S proteasome and thus participates in the ATP-dependent degradation of ubiquitinated proteins. The 26S proteasome plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins that could impair cellular functions, and by removing proteins whose functions are no longer required. Associated with the PA200 or PA28, the 20S proteasome mediates ubiquitin-independent protein degradation. This type of proteolysis is required in several pathways including spermatogenesis (20S-PA200 complex) or generation of a subset of MHC class I-presented antigenic peptides (20S-PA28 complex). . |
Accessions | ENST00000261479.9 [P60900-1] ENST00000554961.5 ENST00000556506.1 ENST00000622405.4 [P60900-3] G3V3I1 ENST00000553688.5 ENST00000554620.5 G3V4S5 H0YJC4 ENST00000555764.5 [P60900-3] ENST00000556221.1 ENST00000554541.5 ENST00000553809.5 G3V5Z7 P60900 ENST00000628955.1 ENST00000540871.5 [P60900-2] ENST00000627895.2 Q9BZ93 G3V3U4 G3V2S7 G3V295 |