PET100 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
natural killer cell	32 studies	30% ± 9%	Explore
CD8-positive, alpha-beta T cell	29 studies	29% ± 9%	Explore
B cell	27 studies	27% ± 8%	Explore
T cell	26 studies	27% ± 10%	Explore
CD4-positive, alpha-beta T cell	26 studies	28% ± 8%	Explore
macrophage	24 studies	33% ± 14%	Explore
classical monocyte	24 studies	36% ± 12%	Explore
non-classical monocyte	23 studies	38% ± 14%	Explore
regulatory T cell	20 studies	31% ± 9%	Explore
conventional dendritic cell	19 studies	32% ± 14%	Explore
endothelial cell	19 studies	37% ± 17%	Explore
fibroblast	18 studies	31% ± 14%	Explore
pericyte	18 studies	27% ± 10%	Explore
monocyte	17 studies	37% ± 16%	Explore
plasma cell	16 studies	35% ± 14%	Explore
plasmacytoid dendritic cell	16 studies	33% ± 13%	Explore
mature NK T cell	16 studies	30% ± 7%	Explore
gamma-delta T cell	16 studies	31% ± 12%	Explore
smooth muscle cell	15 studies	26% ± 8%	Explore
endothelial cell of lymphatic vessel	14 studies	34% ± 13%	Explore
CD16-positive, CD56-dim natural killer cell, human	14 studies	32% ± 9%	Explore
ciliated cell	14 studies	50% ± 19%	Explore
naive B cell	14 studies	26% ± 7%	Explore
epithelial cell	14 studies	40% ± 21%	Explore
CD16-negative, CD56-bright natural killer cell, human	13 studies	28% ± 9%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	12 studies	26% ± 6%	Explore
memory B cell	12 studies	28% ± 6%	Explore
mast cell	11 studies	24% ± 6%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	11 studies	30% ± 8%	Explore
capillary endothelial cell	11 studies	28% ± 8%	Explore
CD4-positive, alpha-beta memory T cell	10 studies	25% ± 9%	Explore
CD8-positive, alpha-beta memory T cell	10 studies	32% ± 10%	Explore
dendritic cell	10 studies	40% ± 24%	Explore
mucosal invariant T cell	10 studies	27% ± 6%	Explore
plasmablast	9 studies	39% ± 22%	Explore
basal cell	9 studies	34% ± 18%	Explore
secretory cell	9 studies	27% ± 11%	Explore
connective tissue cell	9 studies	30% ± 10%	Explore
endothelial cell of artery	9 studies	27% ± 9%	Explore
vein endothelial cell	9 studies	27% ± 11%	Explore
effector memory CD8-positive, alpha-beta T cell	8 studies	31% ± 8%	Explore
goblet cell	8 studies	30% ± 15%	Explore
myeloid cell	8 studies	34% ± 14%	Explore
club cell	7 studies	31% ± 11%	Explore
epithelial cell of proximal tubule	7 studies	35% ± 13%	Explore
myofibroblast cell	7 studies	32% ± 12%	Explore
abnormal cell	7 studies	30% ± 13%	Explore
endothelial cell of vascular tree	7 studies	23% ± 4%	Explore
T follicular helper cell	7 studies	31% ± 7%	Explore
type I pneumocyte	6 studies	37% ± 18%	Explore
platelet	6 studies	22% ± 6%	Explore
effector CD8-positive, alpha-beta T cell	6 studies	32% ± 5%	Explore
leukocyte	6 studies	29% ± 7%	Explore
kidney loop of Henle epithelial cell	6 studies	35% ± 11%	Explore
neutrophil	6 studies	32% ± 14%	Explore
progenitor cell	6 studies	39% ± 16%	Explore
innate lymphoid cell	6 studies	28% ± 5%	Explore
type II pneumocyte	6 studies	38% ± 20%	Explore
erythrocyte	6 studies	28% ± 16%	Explore
effector memory CD4-positive, alpha-beta T cell	6 studies	26% ± 10%	Explore
alveolar macrophage	5 studies	24% ± 3%	Explore
exhausted T cell	5 studies	34% ± 5%	Explore
effector CD4-positive, alpha-beta T cell	5 studies	28% ± 6%	Explore
mononuclear phagocyte	5 studies	33% ± 13%	Explore
renal alpha-intercalated cell	5 studies	56% ± 7%	Explore
mesothelial cell	5 studies	29% ± 16%	Explore
precursor B cell	5 studies	34% ± 9%	Explore
enterocyte	5 studies	25% ± 10%	Explore
neuron	5 studies	42% ± 16%	Explore
hematopoietic precursor cell	4 studies	29% ± 12%	Explore
ionocyte	4 studies	29% ± 10%	Explore
respiratory goblet cell	4 studies	21% ± 5%	Explore
kidney distal convoluted tubule epithelial cell	4 studies	52% ± 3%	Explore
transit amplifying cell	4 studies	28% ± 11%	Explore
retinal cone cell	4 studies	57% ± 26%	Explore
pro-B cell	4 studies	31% ± 9%	Explore
brush cell	4 studies	32% ± 12%	Explore
retinal rod cell	4 studies	36% ± 20%	Explore
intermediate monocyte	4 studies	48% ± 15%	Explore
luminal hormone-sensing cell of mammary gland	4 studies	30% ± 11%	Explore
T-helper 17 cell	4 studies	29% ± 10%	Explore
effector memory CD8-positive, alpha-beta T cell, terminally differentiated	4 studies	28% ± 8%	Explore
deuterosomal cell	3 studies	40% ± 3%	Explore
duct epithelial cell	3 studies	24% ± 3%	Explore
pancreatic A cell	3 studies	29% ± 2%	Explore
type B pancreatic cell	3 studies	20% ± 4%	Explore
glomerular endothelial cell	3 studies	30% ± 4%	Explore
podocyte	3 studies	51% ± 8%	Explore
neural crest cell	3 studies	27% ± 1%	Explore
IgA plasma cell	3 studies	19% ± 2%	Explore
IgG plasma cell	3 studies	20% ± 1%	Explore
retinal ganglion cell	3 studies	53% ± 20%	Explore
placental villous trophoblast	3 studies	25% ± 7%	Explore
lymphocyte	3 studies	36% ± 9%	Explore
immature B cell	3 studies	28% ± 7%	Explore
astrocyte	3 studies	27% ± 16%	Explore
retina horizontal cell	3 studies	35% ± 18%	Explore
microglial cell	3 studies	30% ± 9%	Explore
mucus secreting cell	3 studies	37% ± 11%	Explore
Mueller cell	3 studies	23% ± 3%	Explore
endothelial cell of sinusoid	3 studies	20% ± 1%	Explore
germinal center B cell	3 studies	30% ± 2%	Explore
CD4-positive helper T cell	3 studies	27% ± 9%	Explore
luminal cell of prostate epithelium	3 studies	21% ± 2%	Explore
enteroendocrine cell	3 studies	45% ± 18%	Explore
group 3 innate lymphoid cell	3 studies	35% ± 12%	Explore
T-helper 1 cell	3 studies	30% ± 10%	Explore
central memory CD4-positive, alpha-beta T cell	3 studies	26% ± 7%	Explore
central memory CD8-positive, alpha-beta T cell	3 studies	22% ± 9%	Explore
double negative thymocyte	3 studies	39% ± 15%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
peripheral blood	18 studies	32% ± 10%	Explore
lung	14 studies	33% ± 13%	Explore
kidney	8 studies	31% ± 9%	Explore
intestine	8 studies	28% ± 11%	Explore
eye	6 studies	32% ± 16%	Explore
liver	6 studies	34% ± 24%	Explore
placenta	4 studies	23% ± 5%	Explore
uterus	4 studies	36% ± 11%	Explore
brain	4 studies	29% ± 11%	Explore
pancreas	3 studies	24% ± 1%	Explore
bone marrow	3 studies	24% ± 6%	Explore
thymus	3 studies	34% ± 15%	Explore
lymph node	3 studies	31% ± 5%	Explore
breast	3 studies	20% ± 4%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
uterus	100%	919.35	170 / 170	98%	3.19	448 / 459
prostate	100%	1163.98	245 / 245	97%	3.47	486 / 502
ovary	100%	763.18	180 / 180	95%	2.94	410 / 430
bladder	100%	881.95	21 / 21	95%	3.94	477 / 504
intestine	100%	999.01	966 / 966	94%	3.32	493 / 527
esophagus	100%	988.34	1445 / 1445	92%	1.84	169 / 183
thymus	100%	1427.17	653 / 653	91%	2.83	553 / 605
adrenal gland	100%	1241.54	258 / 258	91%	2.26	210 / 230
brain	100%	1055.64	2640 / 2642	91%	2.96	643 / 705
pancreas	99%	618.54	326 / 328	92%	2.35	163 / 178
stomach	100%	1047.39	359 / 359	90%	2.72	256 / 286
breast	100%	1045.73	459 / 459	84%	2.13	943 / 1118
lung	100%	1033.79	577 / 578	80%	1.69	920 / 1155
liver	100%	870.85	226 / 226	75%	1.65	305 / 406
kidney	100%	1277.96	89 / 89	73%	1.69	656 / 901
skin	100%	959.86	1809 / 1809	64%	1.34	303 / 472
adipose	100%	848.85	1204 / 1204	0%	0	0 / 0
lymph node	0%	0	0 / 0	100%	4.06	29 / 29
spleen	100%	1391.16	241 / 241	0%	0	0 / 0
ureter	0%	0	0 / 0	100%	5.91	1 / 1
blood vessel	100%	894.41	1333 / 1335	0%	0	0 / 0
heart	100%	1199.50	859 / 861	0%	0	0 / 0
muscle	99%	791.85	796 / 803	0%	0	0 / 0
peripheral blood	99%	823.97	916 / 929	0%	0	0 / 0
tonsil	0%	0	0 / 0	71%	2.14	32 / 45
eye	0%	0	0 / 0	70%	1.23	56 / 80
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0