Name | Number of supported studies | Average coverage | |
---|---|---|---|
peripheral blood | 18 studies | 24% ± 9% | |
lung | 17 studies | 41% ± 18% | |
intestine | 11 studies | 29% ± 13% | |
kidney | 9 studies | 33% ± 7% | |
brain | 9 studies | 25% ± 9% | |
pancreas | 4 studies | 58% ± 16% | |
placenta | 4 studies | 41% ± 10% | |
eye | 4 studies | 26% ± 8% | |
uterus | 4 studies | 44% ± 23% | |
prostate | 4 studies | 29% ± 10% | |
lymph node | 4 studies | 37% ± 19% | |
breast | 4 studies | 31% ± 5% | |
liver | 4 studies | 35% ± 16% | |
adrenal gland | 3 studies | 34% ± 13% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 4135.71 | 1445 / 1445 | 100% | 69.89 | 183 / 183 |
lung | 100% | 3992.54 | 578 / 578 | 100% | 92.23 | 1155 / 1155 |
ovary | 100% | 2980.84 | 180 / 180 | 100% | 74.14 | 430 / 430 |
uterus | 100% | 3441.26 | 170 / 170 | 100% | 112.38 | 459 / 459 |
breast | 100% | 2757.39 | 459 / 459 | 100% | 112.62 | 1117 / 1118 |
thymus | 100% | 3477.62 | 653 / 653 | 100% | 69.83 | 604 / 605 |
intestine | 100% | 3668.54 | 966 / 966 | 100% | 84.83 | 526 / 527 |
prostate | 100% | 3819.79 | 245 / 245 | 100% | 86.47 | 501 / 502 |
kidney | 100% | 4777.83 | 89 / 89 | 100% | 82.93 | 899 / 901 |
stomach | 100% | 2433.30 | 359 / 359 | 100% | 76.02 | 285 / 286 |
bladder | 100% | 3547.43 | 21 / 21 | 99% | 96.56 | 501 / 504 |
brain | 99% | 1315.46 | 2607 / 2642 | 99% | 88.70 | 701 / 705 |
adrenal gland | 100% | 3442.21 | 258 / 258 | 98% | 48.63 | 225 / 230 |
skin | 100% | 2378.19 | 1806 / 1809 | 96% | 41.07 | 454 / 472 |
liver | 100% | 1484.62 | 225 / 226 | 95% | 38.00 | 386 / 406 |
pancreas | 95% | 1063.67 | 310 / 328 | 99% | 78.87 | 177 / 178 |
blood vessel | 100% | 4177.84 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 59.07 | 29 / 29 |
spleen | 100% | 3659.58 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 92.60 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 68.35 | 1 / 1 |
adipose | 100% | 2546.41 | 1203 / 1204 | 0% | 0 | 0 / 0 |
muscle | 100% | 2421.11 | 799 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 99% | 3770.18 | 916 / 929 | 0% | 0 | 0 / 0 |
heart | 98% | 2456.85 | 848 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 89% | 27.23 | 71 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0000132 | Biological process | establishment of mitotic spindle orientation |
GO_0051301 | Biological process | cell division |
GO_0046718 | Biological process | symbiont entry into host cell |
GO_0008277 | Biological process | regulation of G protein-coupled receptor signaling pathway |
GO_0019060 | Biological process | intracellular transport of viral protein in host cell |
GO_0007018 | Biological process | microtubule-based movement |
GO_0075521 | Biological process | microtubule-dependent intracellular transport of viral material towards nucleus |
GO_0007399 | Biological process | nervous system development |
GO_0050768 | Biological process | negative regulation of neurogenesis |
GO_0005576 | Cellular component | extracellular region |
GO_0005868 | Cellular component | cytoplasmic dynein complex |
GO_0005794 | Cellular component | Golgi apparatus |
GO_0030286 | Cellular component | dynein complex |
GO_0034774 | Cellular component | secretory granule lumen |
GO_0099503 | Cellular component | secretory vesicle |
GO_1904813 | Cellular component | ficolin-1-rich granule lumen |
GO_0005881 | Cellular component | cytoplasmic microtubule |
GO_0005737 | Cellular component | cytoplasm |
GO_0043657 | Cellular component | host cell |
GO_0005819 | Cellular component | spindle |
GO_0042802 | Molecular function | identical protein binding |
GO_0045505 | Molecular function | dynein intermediate chain binding |
GO_0005515 | Molecular function | protein binding |
Gene name | DYNLT1 |
Protein name | Dynein light chain Tctex-type 1 (Protein CW-1) (T-complex testis-specific protein 1 homolog) |
Synonyms | TCTEX-1 TCTEX1 TCTEL1 |
Description | FUNCTION: Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Binds to transport cargos and is involved in apical cargo transport such as rhodopsin-bearing vesicles in polarized epithelia. May also be a accessory component of axonemal dynein.; FUNCTION: Plays a role in neuronal morphogenesis; the function is independent of cytoplasmic dynein and seems to be coupled to regulation of the actin cytoskeleton by enhancing Rac1 activity. The function in neurogenesis may be regulated by association with a G-protein beta-gamma dimer. May function as a receptor-independent activator of heterotrimeric G-protein signaling; the activation appears to be independent of a nucleotide exchange. Plays a role in regulating neurogenesis; inhibits the genesis of neurons from precursor cells during cortical development presumably by antagonizing ARHGEF2. Involved in the regulation of mitotic spindle orientation (By similarity). Unrelated to the role in retrograde microtubule-associated movement may play a role in the dimerization of cytoplasmic proteins/domains such as for ACVR2B. Binds to the cytoplasmic domain of ACVR2B and, in vitro, inhibits ACVR2B signaling . .; FUNCTION: (Microbial infection) Is involved in intracellular targeting of D-type retrovirus gag polyproteins to the cytoplasmic assembly site. . |
Accessions | P63172 ENST00000367089.8 |