Name | Number of supported studies | Average coverage | |
---|---|---|---|
peripheral blood | 11 studies | 24% ± 6% | |
lung | 10 studies | 32% ± 11% | |
kidney | 8 studies | 22% ± 6% | |
intestine | 7 studies | 27% ± 13% | |
brain | 6 studies | 21% ± 6% | |
pancreas | 4 studies | 52% ± 24% | |
lymph node | 4 studies | 23% ± 9% | |
liver | 4 studies | 28% ± 17% | |
bone marrow | 3 studies | 17% ± 2% | |
eye | 3 studies | 32% ± 12% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 4905.56 | 1445 / 1445 | 100% | 113.84 | 183 / 183 |
intestine | 100% | 5186.02 | 966 / 966 | 100% | 160.42 | 527 / 527 |
kidney | 100% | 5906.94 | 89 / 89 | 100% | 134.55 | 901 / 901 |
liver | 100% | 4098.58 | 226 / 226 | 100% | 105.73 | 406 / 406 |
lung | 100% | 5808.72 | 578 / 578 | 100% | 153.24 | 1155 / 1155 |
ovary | 100% | 5437.77 | 180 / 180 | 100% | 163.71 | 430 / 430 |
pancreas | 100% | 6161.16 | 328 / 328 | 100% | 134.87 | 178 / 178 |
prostate | 100% | 6283.12 | 245 / 245 | 100% | 181.55 | 502 / 502 |
skin | 100% | 7034.02 | 1809 / 1809 | 100% | 159.77 | 472 / 472 |
stomach | 100% | 5171.57 | 359 / 359 | 100% | 142.96 | 286 / 286 |
thymus | 100% | 7567.79 | 653 / 653 | 100% | 169.25 | 605 / 605 |
uterus | 100% | 5739.36 | 170 / 170 | 100% | 146.21 | 459 / 459 |
breast | 100% | 5690.66 | 459 / 459 | 100% | 198.57 | 1116 / 1118 |
brain | 100% | 3952.05 | 2637 / 2642 | 100% | 126.90 | 705 / 705 |
bladder | 100% | 5057.76 | 21 / 21 | 100% | 149.26 | 503 / 504 |
adrenal gland | 100% | 6548.55 | 258 / 258 | 99% | 109.65 | 227 / 230 |
adipose | 100% | 5115.70 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 143.76 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 149.08 | 29 / 29 |
spleen | 100% | 5435.48 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 132.85 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 99.18 | 1 / 1 |
muscle | 100% | 4159.06 | 802 / 803 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 4068.40 | 1333 / 1335 | 0% | 0 | 0 / 0 |
peripheral blood | 99% | 4854.69 | 922 / 929 | 0% | 0 | 0 / 0 |
heart | 99% | 4113.88 | 854 / 861 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006886 | Biological process | intracellular protein transport |
GO_0006890 | Biological process | retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum |
GO_0006891 | Biological process | intra-Golgi vesicle-mediated transport |
GO_0000139 | Cellular component | Golgi membrane |
GO_0030126 | Cellular component | COPI vesicle coat |
GO_0005829 | Cellular component | cytosol |
GO_0005789 | Cellular component | endoplasmic reticulum membrane |
GO_0030133 | Cellular component | transport vesicle |
Gene name | COPZ1 |
Protein name | Alternative protein COPZ1 Coatomer subunit zeta Coatomer subunit zeta-1 (Zeta-1-coat protein) (Zeta-1 COP) |
Synonyms | COPZ CGI-120 HSPC181 |
Description | FUNCTION: The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (By similarity). The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex (By similarity). . FUNCTION: The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex. . FUNCTION: The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex. . FUNCTION: The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex. . FUNCTION: The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex. . FUNCTION: The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex. . FUNCTION: The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex. . FUNCTION: The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex. . FUNCTION: The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex. . FUNCTION: The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex. . |
Accessions | F8VUC5 ENST00000550171.5 P61923 ENST00000262061.7 [P61923-1] F8VYK5 F8W156 F8VXB1 F8W651 ENST00000549043.5 [P61923-4] ENST00000552218.5 F8VYE0 ENST00000551779.5 L0R4W7 ENST00000548753.1 ENST00000553231.5 ENST00000550713.1 ENST00000552362.5 [P61923-5] ENST00000552848.5 F8VVA7 F8VXR1 ENST00000551962.5 ENST00000549116.5 ENST00000455864.6 [P61923-3] F8VYZ4 |