CAMTA1 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
endothelial cell	48 studies	39% ± 15%	Explore
fibroblast	36 studies	27% ± 11%	Explore
smooth muscle cell	32 studies	33% ± 9%	Explore
pericyte	32 studies	33% ± 12%	Explore
macrophage	28 studies	25% ± 11%	Explore
astrocyte	23 studies	58% ± 20%	Explore
epithelial cell	22 studies	38% ± 20%	Explore
basal cell	21 studies	37% ± 16%	Explore
endothelial cell of lymphatic vessel	20 studies	29% ± 8%	Explore
classical monocyte	18 studies	23% ± 8%	Explore
oligodendrocyte precursor cell	17 studies	58% ± 20%	Explore
monocyte	16 studies	24% ± 9%	Explore
oligodendrocyte	16 studies	47% ± 17%	Explore
conventional dendritic cell	16 studies	28% ± 11%	Explore
connective tissue cell	16 studies	33% ± 9%	Explore
capillary endothelial cell	15 studies	27% ± 8%	Explore
microglial cell	15 studies	37% ± 18%	Explore
endothelial cell of vascular tree	14 studies	34% ± 11%	Explore
glutamatergic neuron	13 studies	71% ± 21%	Explore
myofibroblast cell	13 studies	30% ± 8%	Explore
vein endothelial cell	13 studies	34% ± 12%	Explore
endothelial cell of artery	12 studies	33% ± 8%	Explore
ciliated cell	11 studies	35% ± 17%	Explore
GABAergic neuron	11 studies	74% ± 19%	Explore
progenitor cell	11 studies	28% ± 8%	Explore
neuron	11 studies	54% ± 18%	Explore
club cell	10 studies	30% ± 9%	Explore
secretory cell	10 studies	37% ± 19%	Explore
B cell	10 studies	23% ± 7%	Explore
myeloid cell	10 studies	26% ± 10%	Explore
dendritic cell	10 studies	29% ± 17%	Explore
type II pneumocyte	10 studies	23% ± 11%	Explore
plasma cell	9 studies	26% ± 11%	Explore
abnormal cell	9 studies	29% ± 12%	Explore
goblet cell	9 studies	30% ± 13%	Explore
CD4-positive, alpha-beta T cell	8 studies	19% ± 3%	Explore
epithelial cell of proximal tubule	8 studies	38% ± 13%	Explore
renal alpha-intercalated cell	8 studies	42% ± 8%	Explore
mesothelial cell	8 studies	26% ± 10%	Explore
amacrine cell	8 studies	58% ± 21%	Explore
retinal rod cell	8 studies	48% ± 19%	Explore
type I pneumocyte	8 studies	27% ± 10%	Explore
mast cell	8 studies	20% ± 5%	Explore
platelet	7 studies	28% ± 4%	Explore
kidney loop of Henle epithelial cell	7 studies	33% ± 4%	Explore
T cell	7 studies	22% ± 10%	Explore
enterocyte	7 studies	26% ± 7%	Explore
interneuron	7 studies	71% ± 24%	Explore
retinal ganglion cell	7 studies	90% ± 15%	Explore
retinal cone cell	7 studies	73% ± 17%	Explore
CD8-positive, alpha-beta T cell	7 studies	19% ± 3%	Explore
ionocyte	6 studies	33% ± 9%	Explore
naive B cell	6 studies	18% ± 2%	Explore
mononuclear phagocyte	6 studies	28% ± 11%	Explore
natural killer cell	6 studies	21% ± 5%	Explore
leukocyte	6 studies	25% ± 7%	Explore
transit amplifying cell	6 studies	33% ± 14%	Explore
glial cell	6 studies	35% ± 16%	Explore
lymphocyte	6 studies	26% ± 6%	Explore
retina horizontal cell	6 studies	70% ± 16%	Explore
alveolar macrophage	6 studies	23% ± 6%	Explore
cardiac muscle cell	6 studies	27% ± 5%	Explore
Mueller cell	6 studies	42% ± 13%	Explore
hematopoietic precursor cell	5 studies	31% ± 11%	Explore
non-classical monocyte	5 studies	25% ± 7%	Explore
kidney distal convoluted tubule epithelial cell	5 studies	40% ± 8%	Explore
enteroendocrine cell	5 studies	38% ± 12%	Explore
intestinal crypt stem cell	5 studies	24% ± 9%	Explore
retinal bipolar neuron	5 studies	51% ± 18%	Explore
renal principal cell	5 studies	38% ± 11%	Explore
memory B cell	5 studies	17% ± 1%	Explore
hepatocyte	5 studies	42% ± 23%	Explore
plasmacytoid dendritic cell	5 studies	29% ± 7%	Explore
duct epithelial cell	4 studies	22% ± 9%	Explore
respiratory goblet cell	4 studies	33% ± 15%	Explore
pancreatic A cell	4 studies	38% ± 12%	Explore
granule cell	4 studies	67% ± 14%	Explore
megakaryocyte	4 studies	46% ± 13%	Explore
innate lymphoid cell	4 studies	19% ± 5%	Explore
retinal pigment epithelial cell	4 studies	52% ± 22%	Explore
mucus secreting cell	4 studies	33% ± 7%	Explore
adipocyte	4 studies	21% ± 4%	Explore
OFF-bipolar cell	4 studies	64% ± 24%	Explore
ON-bipolar cell	4 studies	72% ± 24%	Explore
luminal hormone-sensing cell of mammary gland	4 studies	41% ± 7%	Explore
luminal cell of prostate epithelium	4 studies	38% ± 14%	Explore
muscle cell	4 studies	44% ± 24%	Explore
CD8-positive, alpha-beta memory T cell	4 studies	19% ± 4%	Explore
keratinocyte	4 studies	26% ± 12%	Explore
plasmablast	3 studies	52% ± 14%	Explore
type B pancreatic cell	3 studies	36% ± 4%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	3 studies	17% ± 1%	Explore
CD16-positive, CD56-dim natural killer cell, human	3 studies	16% ± 1%	Explore
effector memory CD8-positive, alpha-beta T cell	3 studies	21% ± 5%	Explore
podocyte	3 studies	34% ± 6%	Explore
mature NK T cell	3 studies	18% ± 2%	Explore
renal beta-intercalated cell	3 studies	36% ± 11%	Explore
differentiation-committed oligodendrocyte precursor	3 studies	58% ± 6%	Explore
neural crest cell	3 studies	40% ± 15%	Explore
gamma-delta T cell	3 studies	29% ± 14%	Explore
GABAergic interneuron	3 studies	79% ± 8%	Explore
mucosal invariant T cell	3 studies	18% ± 1%	Explore
brush cell	3 studies	26% ± 12%	Explore
precursor B cell	3 studies	18% ± 2%	Explore
serous secreting cell	3 studies	38% ± 11%	Explore
GABAergic amacrine cell	3 studies	80% ± 7%	Explore
glycinergic amacrine cell	3 studies	65% ± 3%	Explore
rod bipolar cell	3 studies	53% ± 14%	Explore
chondrocyte	3 studies	27% ± 8%	Explore
erythroblast	3 studies	30% ± 21%	Explore
T follicular helper cell	3 studies	16% ± 1%	Explore
intermediate monocyte	3 studies	28% ± 13%	Explore
regulatory T cell	3 studies	19% ± 3%	Explore
pancreatic ductal cell	3 studies	49% ± 10%	Explore
neural progenitor cell	3 studies	47% ± 16%	Explore
ependymal cell	3 studies	55% ± 11%	Explore
hematopoietic stem cell	3 studies	28% ± 9%	Explore
megakaryocyte-erythroid progenitor cell	3 studies	45% ± 18%	Explore
adventitial cell	3 studies	19% ± 3%	Explore
group 3 innate lymphoid cell	3 studies	30% ± 8%	Explore
Schwann cell	3 studies	33% ± 11%	Explore
melanocyte	3 studies	29% ± 7%	Explore
T-helper 17 cell	3 studies	18% ± 1%	Explore
CD4-positive, alpha-beta memory T cell	3 studies	18% ± 3%	Explore
myoepithelial cell	3 studies	43% ± 7%	Explore
progenitor cell of mammary luminal epithelium	3 studies	28% ± 3%	Explore
parietal epithelial cell	3 studies	46% ± 6%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	21 studies	54% ± 23%	Explore
lung	17 studies	28% ± 14%	Explore
kidney	11 studies	28% ± 8%	Explore
eye	11 studies	46% ± 19%	Explore
peripheral blood	8 studies	22% ± 6%	Explore
intestine	8 studies	29% ± 10%	Explore
heart	6 studies	21% ± 2%	Explore
liver	6 studies	29% ± 18%	Explore
uterus	5 studies	26% ± 15%	Explore
prostate	5 studies	35% ± 16%	Explore
breast	5 studies	27% ± 7%	Explore
pancreas	4 studies	35% ± 12%	Explore
lymph node	4 studies	24% ± 8%	Explore
thymus	3 studies	28% ± 7%	Explore
esophagus	3 studies	29% ± 19%	Explore
adipose	3 studies	21% ± 1%	Explore
skin	3 studies	26% ± 8%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
brain	100%	6248.70	2642 / 2642	100%	24.05	705 / 705
ovary	100%	1303.78	180 / 180	100%	17.98	430 / 430
esophagus	100%	1968.88	1444 / 1445	100%	10.04	183 / 183
prostate	100%	1937.31	245 / 245	100%	10.97	501 / 502
uterus	100%	1590.92	170 / 170	100%	14.12	458 / 459
kidney	100%	2375.89	89 / 89	100%	10.89	898 / 901
breast	100%	1689.10	459 / 459	100%	11.45	1114 / 1118
intestine	100%	2151.09	966 / 966	100%	9.77	525 / 527
thymus	100%	1821.42	651 / 653	100%	13.74	604 / 605
stomach	99%	1402.89	357 / 359	100%	10.35	286 / 286
skin	100%	1271.08	1800 / 1809	100%	10.59	471 / 472
bladder	100%	1969.33	21 / 21	99%	10.36	500 / 504
lung	99%	1881.30	573 / 578	100%	10.42	1153 / 1155
adrenal gland	100%	1714.09	258 / 258	99%	18.45	227 / 230
liver	100%	1000.01	225 / 226	98%	7.23	396 / 406
pancreas	77%	606.84	251 / 328	99%	9.48	176 / 178
lymph node	0%	0	0 / 0	100%	8.57	29 / 29
spleen	100%	2363.63	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	11.38	45 / 45
ureter	0%	0	0 / 0	100%	4.39	1 / 1
blood vessel	100%	2836.91	1334 / 1335	0%	0	0 / 0
adipose	100%	1494.95	1201 / 1204	0%	0	0 / 0
muscle	99%	1557.00	798 / 803	0%	0	0 / 0
heart	98%	2088.84	844 / 861	0%	0	0 / 0
eye	0%	0	0 / 0	96%	7.45	77 / 80
peripheral blood	36%	426.16	332 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0