YBX3 | OmnibusX

I. Expression across cell types

Name	Number of supported studies	Average coverage
endothelial cell	47 studies	50% ± 24%	Explore
fibroblast	42 studies	49% ± 23%	Explore
pericyte	34 studies	54% ± 25%	Explore
smooth muscle cell	32 studies	48% ± 24%	Explore
macrophage	28 studies	36% ± 14%	Explore
endothelial cell of lymphatic vessel	26 studies	58% ± 23%	Explore
basal cell	23 studies	60% ± 23%	Explore
classical monocyte	22 studies	40% ± 14%	Explore
ciliated cell	20 studies	64% ± 21%	Explore
epithelial cell	20 studies	48% ± 27%	Explore
B cell	19 studies	31% ± 16%	Explore
conventional dendritic cell	18 studies	35% ± 15%	Explore
naive B cell	17 studies	34% ± 13%	Explore
non-classical monocyte	16 studies	38% ± 13%	Explore
connective tissue cell	15 studies	46% ± 19%	Explore
capillary endothelial cell	15 studies	38% ± 17%	Explore
endothelial cell of artery	14 studies	56% ± 17%	Explore
monocyte	13 studies	36% ± 18%	Explore
myofibroblast cell	13 studies	38% ± 19%	Explore
vein endothelial cell	13 studies	52% ± 20%	Explore
endothelial cell of vascular tree	13 studies	73% ± 25%	Explore
dendritic cell	12 studies	42% ± 21%	Explore
type I pneumocyte	11 studies	36% ± 19%	Explore
type II pneumocyte	11 studies	39% ± 19%	Explore
club cell	11 studies	36% ± 20%	Explore
secretory cell	11 studies	61% ± 25%	Explore
mast cell	10 studies	29% ± 13%	Explore
erythrocyte	10 studies	52% ± 17%	Explore
mesothelial cell	10 studies	35% ± 18%	Explore
astrocyte	10 studies	28% ± 10%	Explore
myeloid cell	10 studies	35% ± 17%	Explore
abnormal cell	9 studies	40% ± 26%	Explore
retinal rod cell	8 studies	43% ± 18%	Explore
alveolar macrophage	7 studies	34% ± 15%	Explore
respiratory goblet cell	7 studies	30% ± 20%	Explore
leukocyte	7 studies	33% ± 13%	Explore
precursor B cell	7 studies	52% ± 17%	Explore
goblet cell	7 studies	32% ± 19%	Explore
mononuclear phagocyte	6 studies	45% ± 16%	Explore
transit amplifying cell	6 studies	28% ± 16%	Explore
hematopoietic stem cell	6 studies	45% ± 18%	Explore
ionocyte	5 studies	44% ± 14%	Explore
pro-B cell	5 studies	52% ± 9%	Explore
immature B cell	5 studies	49% ± 15%	Explore
microglial cell	5 studies	28% ± 7%	Explore
adventitial cell	5 studies	58% ± 19%	Explore
cardiac muscle cell	5 studies	24% ± 4%	Explore
CD8-positive, alpha-beta T cell	5 studies	25% ± 11%	Explore
hematopoietic precursor cell	4 studies	52% ± 22%	Explore
deuterosomal cell	4 studies	28% ± 5%	Explore
duct epithelial cell	4 studies	32% ± 12%	Explore
squamous epithelial cell	4 studies	46% ± 21%	Explore
platelet	4 studies	37% ± 9%	Explore
intestinal crypt stem cell	4 studies	28% ± 9%	Explore
progenitor cell	4 studies	33% ± 21%	Explore
luminal hormone-sensing cell of mammary gland	4 studies	61% ± 14%	Explore
luminal cell of prostate epithelium	4 studies	53% ± 18%	Explore
muscle cell	4 studies	46% ± 20%	Explore
keratinocyte	4 studies	66% ± 21%	Explore
T cell	3 studies	19% ± 2%	Explore
hillock cell	3 studies	47% ± 14%	Explore
monocyte-derived dendritic cell	3 studies	52% ± 19%	Explore
glomerular endothelial cell	3 studies	23% ± 2%	Explore
kidney loop of Henle epithelial cell	3 studies	28% ± 12%	Explore
placental villous trophoblast	3 studies	41% ± 12%	Explore
brush cell	3 studies	41% ± 29%	Explore
retinal cone cell	3 studies	42% ± 7%	Explore
retinal pigment epithelial cell	3 studies	45% ± 9%	Explore
serous secreting cell	3 studies	34% ± 21%	Explore
adipocyte	3 studies	24% ± 4%	Explore
tissue-resident macrophage	3 studies	34% ± 16%	Explore
lymphocyte	3 studies	47% ± 28%	Explore
CD8-positive, alpha-beta memory T cell	3 studies	18% ± 3%	Explore
effector memory CD8-positive, alpha-beta T cell	3 studies	26% ± 9%	Explore
megakaryocyte-erythroid progenitor cell	3 studies	51% ± 18%	Explore
enteroendocrine cell	3 studies	21% ± 2%	Explore
glial cell	3 studies	23% ± 6%	Explore
mucus secreting cell	3 studies	29% ± 12%	Explore
melanocyte	3 studies	49% ± 20%	Explore
progenitor cell of mammary luminal epithelium	3 studies	57% ± 21%	Explore

II. Expression across tissues

Name	Number of supported studies	Average coverage
lung	19 studies	37% ± 18%	Explore
peripheral blood	8 studies	32% ± 16%	Explore
eye	8 studies	36% ± 17%	Explore
intestine	7 studies	30% ± 15%	Explore
uterus	5 studies	57% ± 23%	Explore
adipose	5 studies	18% ± 3%	Explore
kidney	4 studies	29% ± 14%	Explore
placenta	4 studies	40% ± 14%	Explore
heart	4 studies	25% ± 3%	Explore
esophagus	4 studies	44% ± 23%	Explore
breast	4 studies	53% ± 23%	Explore
prostate	4 studies	69% ± 27%	Explore
lymph node	3 studies	29% ± 11%	Explore
bone marrow	3 studies	28% ± 8%	Explore
skin	3 studies	54% ± 21%	Explore

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
ovary	100%	13594.34	180 / 180	100%	91.08	430 / 430
esophagus	100%	24195.59	1444 / 1445	100%	124.43	183 / 183
prostate	100%	18130.58	245 / 245	100%	69.56	500 / 502
uterus	100%	15123.19	170 / 170	99%	123.55	456 / 459
lung	99%	20531.85	575 / 578	99%	98.71	1147 / 1155
bladder	100%	21896.00	21 / 21	98%	89.25	496 / 504
thymus	99%	14025.41	646 / 653	99%	63.87	599 / 605
intestine	98%	17155.27	943 / 966	100%	66.15	525 / 527
kidney	94%	11784.66	84 / 89	99%	99.92	890 / 901
pancreas	97%	15440.00	318 / 328	96%	71.73	171 / 178
skin	100%	28224.62	1808 / 1809	92%	63.78	434 / 472
breast	100%	20976.68	459 / 459	87%	50.13	976 / 1118
stomach	82%	11566.04	294 / 359	99%	61.36	284 / 286
adrenal gland	92%	8795.81	237 / 258	48%	20.80	110 / 230
eye	0%	0	0 / 0	100%	65.25	80 / 80
muscle	100%	279203.41	803 / 803	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	142.15	45 / 45
ureter	0%	0	0 / 0	100%	27.44	1 / 1
blood vessel	100%	24410.26	1334 / 1335	0%	0	0 / 0
adipose	100%	23299.35	1203 / 1204	0%	0	0 / 0
heart	97%	26588.55	833 / 861	0%	0	0 / 0
peripheral blood	96%	16803.59	891 / 929	0%	0	0 / 0
spleen	93%	7654.89	223 / 241	0%	0	0 / 0
lymph node	0%	0	0 / 0	86%	32.58	25 / 29
brain	11%	805.03	303 / 2642	60%	21.03	421 / 705
liver	16%	1326.34	37 / 226	26%	11.71	107 / 406
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0

III. Associated gene sets

GO_0048642	Biological process	negative regulation of skeletal muscle tissue development
GO_0010468	Biological process	regulation of gene expression
GO_2000767	Biological process	positive regulation of cytoplasmic translation
GO_0007283	Biological process	spermatogenesis
GO_0001701	Biological process	in utero embryonic development
GO_0000122	Biological process	negative regulation of transcription by RNA polymerase II
GO_0071356	Biological process	cellular response to tumor necrosis factor
GO_0009566	Biological process	fertilization
GO_0060546	Biological process	negative regulation of necroptotic process
GO_2000242	Biological process	negative regulation of reproductive process
GO_0008584	Biological process	male gonad development
GO_0006915	Biological process	apoptotic process
GO_0070935	Biological process	3'-UTR-mediated mRNA stabilization
GO_1902219	Biological process	negative regulation of intrinsic apoptotic signaling pathway in response to osmotic stress
GO_0071474	Biological process	cellular hyperosmotic response
GO_0046622	Biological process	positive regulation of organ growth
GO_0035234	Biological process	ectopic germ cell programmed cell death
GO_0048471	Cellular component	perinuclear region of cytoplasm
GO_0005829	Cellular component	cytosol
GO_0045202	Cellular component	synapse
GO_0005737	Cellular component	cytoplasm
GO_0005923	Cellular component	bicellular tight junction
GO_0005634	Cellular component	nucleus
GO_0000977	Molecular function	RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO_0003676	Molecular function	nucleic acid binding
GO_0043021	Molecular function	ribonucleoprotein complex binding
GO_0031267	Molecular function	small GTPase binding
GO_0003723	Molecular function	RNA binding
GO_0003730	Molecular function	mRNA 3'-UTR binding
GO_0005515	Molecular function	protein binding

IV. Literature review

[source]

Gene name	YBX3
Protein name	Y-box-binding protein 3 (Cold shock domain-containing protein A) (DNA-binding protein A) (Single-strand DNA-binding protein NF-GMB) Y-box binding protein 3
Synonyms	CSDA DBPA
Description	FUNCTION: Binds to the GM-CSF promoter. Seems to act as a repressor. Binds also to full-length mRNA and to short RNA sequences containing the consensus site 5'-UCCAUCA-3'. May have a role in translation repression (By similarity). .
Accessions	ENST00000544622.4 ENST00000279550.11 [P16989-2] P16989 A0A0D9SEI8 ENST00000228251.9 [P16989-1]

YBX3 report

I. Expression across cell types

II. Expression across tissues

III. Associated gene sets

IV. Literature review