VAMP5 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
endothelial cell	40 studies	51% ± 23%	Explore
fibroblast	28 studies	34% ± 14%	Explore
natural killer cell	24 studies	25% ± 7%	Explore
classical monocyte	22 studies	34% ± 14%	Explore
non-classical monocyte	22 studies	56% ± 16%	Explore
pericyte	19 studies	38% ± 18%	Explore
endothelial cell of lymphatic vessel	18 studies	54% ± 13%	Explore
macrophage	18 studies	34% ± 12%	Explore
CD8-positive, alpha-beta T cell	18 studies	29% ± 10%	Explore
regulatory T cell	18 studies	28% ± 11%	Explore
smooth muscle cell	16 studies	23% ± 9%	Explore
CD4-positive, alpha-beta T cell	16 studies	22% ± 5%	Explore
capillary endothelial cell	16 studies	55% ± 19%	Explore
T cell	15 studies	22% ± 6%	Explore
monocyte	14 studies	42% ± 11%	Explore
endothelial cell of artery	14 studies	53% ± 23%	Explore
conventional dendritic cell	13 studies	28% ± 7%	Explore
mature NK T cell	12 studies	24% ± 8%	Explore
vein endothelial cell	12 studies	51% ± 17%	Explore
gamma-delta T cell	12 studies	28% ± 10%	Explore
CD16-positive, CD56-dim natural killer cell, human	11 studies	27% ± 5%	Explore
connective tissue cell	11 studies	31% ± 11%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	10 studies	28% ± 11%	Explore
endothelial cell of vascular tree	10 studies	50% ± 18%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	9 studies	20% ± 4%	Explore
CD16-negative, CD56-bright natural killer cell, human	9 studies	25% ± 7%	Explore
mucosal invariant T cell	8 studies	25% ± 4%	Explore
CD8-positive, alpha-beta memory T cell	7 studies	30% ± 16%	Explore
dendritic cell	7 studies	28% ± 13%	Explore
effector CD8-positive, alpha-beta T cell	6 studies	32% ± 10%	Explore
myeloid cell	6 studies	34% ± 9%	Explore
plasma cell	5 studies	27% ± 7%	Explore
B cell	5 studies	18% ± 2%	Explore
effector memory CD8-positive, alpha-beta T cell	5 studies	34% ± 8%	Explore
myofibroblast cell	5 studies	24% ± 7%	Explore
basal cell	5 studies	33% ± 22%	Explore
CD4-positive, alpha-beta memory T cell	5 studies	31% ± 12%	Explore
plasmablast	4 studies	28% ± 13%	Explore
leukocyte	4 studies	21% ± 4%	Explore
mononuclear phagocyte	4 studies	32% ± 16%	Explore
exhausted T cell	4 studies	45% ± 10%	Explore
glomerular endothelial cell	4 studies	82% ± 5%	Explore
adventitial cell	4 studies	27% ± 9%	Explore
endothelial cell of sinusoid	4 studies	45% ± 31%	Explore
T follicular helper cell	4 studies	19% ± 1%	Explore
effector CD4-positive, alpha-beta T cell	4 studies	42% ± 10%	Explore
intermediate monocyte	4 studies	54% ± 22%	Explore
effector memory CD4-positive, alpha-beta T cell	4 studies	29% ± 11%	Explore
secretory cell	4 studies	32% ± 17%	Explore
effector memory CD8-positive, alpha-beta T cell, terminally differentiated	4 studies	25% ± 5%	Explore
podocyte	3 studies	55% ± 11%	Explore
abnormal cell	3 studies	34% ± 15%	Explore
common myeloid progenitor	3 studies	35% ± 20%	Explore
lymphocyte	3 studies	28% ± 8%	Explore
epithelial cell	3 studies	28% ± 5%	Explore
club cell	3 studies	23% ± 9%	Explore
inflammatory macrophage	3 studies	31% ± 6%	Explore
innate lymphoid cell	3 studies	20% ± 5%	Explore
ciliated cell	3 studies	29% ± 8%	Explore
T-helper 1 cell	3 studies	24% ± 3%	Explore
T-helper 17 cell	3 studies	23% ± 4%	Explore
hematopoietic stem cell	3 studies	31% ± 2%	Explore
double negative thymocyte	3 studies	34% ± 10%	Explore
hepatocyte	3 studies	36% ± 19%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
peripheral blood	14 studies	29% ± 8%	Explore
lung	9 studies	29% ± 11%	Explore
liver	5 studies	23% ± 6%	Explore
uterus	4 studies	23% ± 2%	Explore
intestine	3 studies	19% ± 4%	Explore
kidney	3 studies	32% ± 4%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
thymus	100%	1869.88	653 / 653	98%	135.43	593 / 605
liver	98%	1165.15	221 / 226	100%	192.76	405 / 406
kidney	100%	2095.75	89 / 89	95%	170.99	856 / 901
breast	100%	3131.13	459 / 459	95%	85.00	1060 / 1118
lung	100%	3631.25	578 / 578	94%	148.39	1088 / 1155
skin	100%	1571.25	1802 / 1809	94%	211.29	444 / 472
bladder	100%	2380.38	21 / 21	92%	120.02	464 / 504
prostate	100%	2038.51	244 / 245	92%	65.91	461 / 502
adrenal gland	100%	2988.99	258 / 258	89%	96.84	204 / 230
uterus	100%	2193.85	170 / 170	88%	116.92	406 / 459
brain	87%	946.20	2286 / 2642	99%	160.25	698 / 705
intestine	99%	1629.94	958 / 966	80%	57.40	421 / 527
ovary	100%	1348.80	180 / 180	78%	43.84	334 / 430
stomach	95%	1213.27	340 / 359	79%	54.73	226 / 286
esophagus	100%	1806.09	1443 / 1445	70%	38.69	128 / 183
pancreas	64%	350.46	209 / 328	97%	112.47	172 / 178
adipose	100%	3319.89	1204 / 1204	0%	0	0 / 0
lymph node	0%	0	0 / 0	100%	405.85	29 / 29
spleen	100%	2538.98	241 / 241	0%	0	0 / 0
ureter	0%	0	0 / 0	100%	82.54	1 / 1
heart	100%	1749.44	860 / 861	0%	0	0 / 0
muscle	100%	2424.68	801 / 803	0%	0	0 / 0
blood vessel	100%	1883.86	1330 / 1335	0%	0	0 / 0
eye	0%	0	0 / 0	98%	115.83	78 / 80
peripheral blood	95%	1266.69	886 / 929	0%	0	0 / 0
tonsil	0%	0	0 / 0	93%	97.19	42 / 45
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0