RAB6A | OmnibusX

I. Expression across cell types

Name	Number of supported studies	Average coverage
endothelial cell	37 studies	31% ± 13%	Explore
fibroblast	25 studies	24% ± 10%	Explore
pericyte	22 studies	23% ± 8%	Explore
natural killer cell	18 studies	21% ± 4%	Explore
astrocyte	18 studies	33% ± 15%	Explore
macrophage	17 studies	28% ± 12%	Explore
endothelial cell of lymphatic vessel	16 studies	27% ± 9%	Explore
smooth muscle cell	16 studies	22% ± 5%	Explore
oligodendrocyte precursor cell	15 studies	41% ± 19%	Explore
capillary endothelial cell	14 studies	21% ± 5%	Explore
oligodendrocyte	13 studies	34% ± 12%	Explore
glutamatergic neuron	12 studies	50% ± 25%	Explore
regulatory T cell	12 studies	19% ± 3%	Explore
CD16-positive, CD56-dim natural killer cell, human	11 studies	22% ± 4%	Explore
microglial cell	11 studies	29% ± 10%	Explore
type I pneumocyte	10 studies	30% ± 8%	Explore
GABAergic neuron	10 studies	49% ± 20%	Explore
CD16-negative, CD56-bright natural killer cell, human	10 studies	19% ± 3%	Explore
neuron	10 studies	48% ± 19%	Explore
CD8-positive, alpha-beta T cell	10 studies	19% ± 3%	Explore
adipocyte	10 studies	28% ± 7%	Explore
gamma-delta T cell	10 studies	24% ± 7%	Explore
T cell	9 studies	19% ± 4%	Explore
effector memory CD8-positive, alpha-beta T cell	9 studies	18% ± 2%	Explore
endothelial cell of artery	9 studies	21% ± 6%	Explore
vein endothelial cell	9 studies	24% ± 14%	Explore
mucosal invariant T cell	9 studies	20% ± 2%	Explore
endothelial cell of vascular tree	9 studies	26% ± 11%	Explore
CD8-positive, alpha-beta memory T cell	8 studies	20% ± 5%	Explore
CD4-positive, alpha-beta T cell	8 studies	18% ± 3%	Explore
connective tissue cell	8 studies	24% ± 5%	Explore
myofibroblast cell	8 studies	24% ± 7%	Explore
myeloid cell	8 studies	27% ± 7%	Explore
epithelial cell	8 studies	41% ± 18%	Explore
mast cell	8 studies	21% ± 5%	Explore
mature NK T cell	8 studies	20% ± 3%	Explore
classical monocyte	7 studies	21% ± 5%	Explore
non-classical monocyte	7 studies	23% ± 8%	Explore
retinal ganglion cell	7 studies	56% ± 27%	Explore
monocyte	7 studies	25% ± 8%	Explore
CD4-positive, alpha-beta memory T cell	6 studies	19% ± 3%	Explore
interneuron	6 studies	53% ± 21%	Explore
plasmacytoid dendritic cell	6 studies	21% ± 6%	Explore
basal cell	6 studies	32% ± 16%	Explore
club cell	6 studies	22% ± 7%	Explore
ciliated cell	6 studies	29% ± 11%	Explore
type II pneumocyte	6 studies	27% ± 8%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	6 studies	17% ± 1%	Explore
B cell	5 studies	19% ± 3%	Explore
plasma cell	5 studies	27% ± 8%	Explore
retinal cone cell	5 studies	24% ± 6%	Explore
retinal rod cell	5 studies	18% ± 3%	Explore
dendritic cell	5 studies	28% ± 9%	Explore
lymphocyte	5 studies	26% ± 6%	Explore
Mueller cell	5 studies	26% ± 6%	Explore
abnormal cell	5 studies	30% ± 14%	Explore
goblet cell	5 studies	33% ± 22%	Explore
effector memory CD8-positive, alpha-beta T cell, terminally differentiated	5 studies	19% ± 3%	Explore
respiratory goblet cell	4 studies	24% ± 6%	Explore
conventional dendritic cell	4 studies	25% ± 9%	Explore
glial cell	4 studies	29% ± 11%	Explore
granule cell	4 studies	35% ± 9%	Explore
naive B cell	4 studies	17% ± 2%	Explore
enterocyte	4 studies	20% ± 1%	Explore
amacrine cell	4 studies	36% ± 10%	Explore
retina horizontal cell	4 studies	21% ± 5%	Explore
retinal pigment epithelial cell	4 studies	43% ± 16%	Explore
Schwann cell	4 studies	26% ± 10%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	4 studies	17% ± 1%	Explore
hepatocyte	4 studies	47% ± 24%	Explore
enteroendocrine cell	4 studies	25% ± 9%	Explore
alveolar macrophage	4 studies	33% ± 10%	Explore
renal principal cell	4 studies	22% ± 4%	Explore
secretory cell	3 studies	24% ± 9%	Explore
pancreatic A cell	3 studies	29% ± 8%	Explore
type B pancreatic cell	3 studies	38% ± 12%	Explore
plasmablast	3 studies	33% ± 14%	Explore
glomerular endothelial cell	3 studies	24% ± 2%	Explore
GABAergic interneuron	3 studies	38% ± 3%	Explore
progenitor cell	3 studies	23% ± 4%	Explore
precursor B cell	3 studies	19% ± 3%	Explore
retinal bipolar neuron	3 studies	21% ± 1%	Explore
cardiac muscle cell	3 studies	18% ± 3%	Explore
mesothelial cell	3 studies	26% ± 5%	Explore
mononuclear phagocyte	3 studies	30% ± 7%	Explore
OFF-bipolar cell	3 studies	36% ± 26%	Explore
glycinergic amacrine cell	3 studies	22% ± 7%	Explore
T follicular helper cell	3 studies	16% ± 2%	Explore
exhausted T cell	3 studies	18% ± 1%	Explore
innate lymphoid cell	3 studies	19% ± 3%	Explore
muscle cell	3 studies	34% ± 15%	Explore
effector memory CD4-positive, alpha-beta T cell	3 studies	19% ± 1%	Explore
ependymal cell	3 studies	34% ± 14%	Explore
adventitial cell	3 studies	19% ± 1%	Explore
group 3 innate lymphoid cell	3 studies	24% ± 4%	Explore
memory B cell	3 studies	17% ± 2%	Explore
double negative thymocyte	3 studies	29% ± 6%	Explore

II. Expression across tissues

Name	Number of supported studies	Average coverage
brain	18 studies	41% ± 20%	Explore
lung	11 studies	24% ± 6%	Explore
peripheral blood	10 studies	19% ± 2%	Explore
eye	8 studies	26% ± 13%	Explore
heart	4 studies	21% ± 2%	Explore
intestine	4 studies	23% ± 11%	Explore
adipose	4 studies	31% ± 14%	Explore
pancreas	3 studies	34% ± 10%	Explore
kidney	3 studies	19% ± 3%	Explore
liver	3 studies	39% ± 9%	Explore
placenta	3 studies	21% ± 7%	Explore

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
brain	100%	13108.42	2642 / 2642	100%	142.13	705 / 705
breast	100%	7251.44	459 / 459	100%	134.46	1118 / 1118
esophagus	100%	8210.52	1445 / 1445	100%	123.48	183 / 183
ovary	100%	5933.27	180 / 180	100%	107.46	430 / 430
prostate	100%	6482.22	245 / 245	100%	100.80	502 / 502
lung	100%	7872.47	577 / 578	100%	101.80	1155 / 1155
bladder	100%	6927.90	21 / 21	100%	91.58	503 / 504
uterus	100%	7059.48	170 / 170	100%	90.32	458 / 459
intestine	100%	6906.97	966 / 966	100%	87.22	525 / 527
thymus	100%	7144.85	653 / 653	100%	88.39	602 / 605
kidney	100%	5602.73	89 / 89	99%	84.56	896 / 901
stomach	100%	4217.75	359 / 359	99%	87.53	283 / 286
adrenal gland	100%	6478.64	258 / 258	99%	83.75	227 / 230
pancreas	98%	3140.75	321 / 328	99%	81.57	177 / 178
liver	99%	4418.36	224 / 226	97%	45.34	395 / 406
skin	100%	7394.96	1808 / 1809	96%	84.23	454 / 472
blood vessel	100%	10288.03	1335 / 1335	0%	0	0 / 0
lymph node	0%	0	0 / 0	100%	43.69	29 / 29
spleen	100%	4691.75	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	75.73	45 / 45
ureter	0%	0	0 / 0	100%	50.04	1 / 1
adipose	100%	7999.41	1203 / 1204	0%	0	0 / 0
muscle	100%	5572.40	802 / 803	0%	0	0 / 0
heart	98%	5311.70	847 / 861	0%	0	0 / 0
peripheral blood	87%	3164.36	810 / 929	0%	0	0 / 0
eye	0%	0	0 / 0	86%	42.21	69 / 80
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0

III. Associated gene sets

GO_0006890	Biological process	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO_0031175	Biological process	neuron projection development
GO_0034498	Biological process	early endosome to Golgi transport
GO_0006886	Biological process	intracellular protein transport
GO_0018125	Biological process	peptidyl-cysteine methylation
GO_0034067	Biological process	protein localization to Golgi apparatus
GO_0072385	Biological process	minus-end-directed organelle transport along microtubule
GO_0042147	Biological process	retrograde transport, endosome to Golgi
GO_1903292	Biological process	protein localization to Golgi membrane
GO_0006891	Biological process	intra-Golgi vesicle-mediated transport
GO_0019882	Biological process	antigen processing and presentation
GO_0030667	Cellular component	secretory granule membrane
GO_0005886	Cellular component	plasma membrane
GO_0031410	Cellular component	cytoplasmic vesicle
GO_0012505	Cellular component	endomembrane system
GO_0005789	Cellular component	endoplasmic reticulum membrane
GO_0016020	Cellular component	membrane
GO_0002080	Cellular component	acrosomal membrane
GO_0070062	Cellular component	extracellular exosome
GO_0005794	Cellular component	Golgi apparatus
GO_0032588	Cellular component	trans-Golgi network membrane
GO_0005802	Cellular component	trans-Golgi network
GO_0000139	Cellular component	Golgi membrane
GO_0070381	Cellular component	endosome to plasma membrane transport vesicle
GO_0005829	Cellular component	cytosol
GO_0019904	Molecular function	protein domain specific binding
GO_0031489	Molecular function	myosin V binding
GO_0005525	Molecular function	GTP binding
GO_0005515	Molecular function	protein binding
GO_0003924	Molecular function	GTPase activity

IV. Literature review

[source]

Gene name	RAB6A
Protein name	RAB6A protein H.sapiens ras-related Hrab6 protein (RAB6A, member RAS oncogene family, isoform CRA_a) RAB6A, member RAS oncogene family Ras-related protein Rab-6A (Rab-6)
Synonyms	RAB6 hCG_1773959
Description	FUNCTION: Regulator of COPI-independent retrograde transport from the Golgi apparatus towards the endoplasmic reticulum (ER) . Has a low GTPase activity . Recruits VPS13B to the Golgi membrane . Plays a role in neuron projection development (Probable). .
Accessions	ENST00000536566.5 ENST00000541973.5 [P20340-4] ENST00000310653.10 [P20340-2] ENST00000537446.5 P20340 ENST00000336083.8 [P20340-1] F5H3K7 ENST00000545625.5 Q6FGX3 A0A024R5J5 F5GX61 ENST00000541588.5 [P20340-3] ENST00000540771.5

RAB6A report

I. Expression across cell types

II. Expression across tissues

III. Associated gene sets

IV. Literature review