Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
lung | 100% | 954.03 | 578 / 578 | 93% | 14.84 | 1074 / 1155 |
stomach | 81% | 279.46 | 291 / 359 | 88% | 13.62 | 251 / 286 |
prostate | 87% | 297.01 | 212 / 245 | 81% | 6.66 | 406 / 502 |
thymus | 94% | 417.25 | 612 / 653 | 72% | 64.98 | 434 / 605 |
intestine | 62% | 737.89 | 602 / 966 | 92% | 18.48 | 485 / 527 |
uterus | 65% | 114.49 | 111 / 170 | 82% | 11.75 | 376 / 459 |
kidney | 71% | 272.18 | 63 / 89 | 72% | 10.69 | 653 / 901 |
bladder | 67% | 281.86 | 14 / 21 | 75% | 10.92 | 380 / 504 |
breast | 66% | 146.90 | 302 / 459 | 73% | 10.69 | 812 / 1118 |
esophagus | 43% | 108.39 | 624 / 1445 | 77% | 11.65 | 140 / 183 |
liver | 76% | 151.52 | 171 / 226 | 43% | 4.43 | 174 / 406 |
pancreas | 12% | 17.78 | 39 / 328 | 92% | 19.21 | 163 / 178 |
lymph node | 0% | 0 | 0 / 0 | 100% | 146.23 | 29 / 29 |
spleen | 100% | 3924.63 | 241 / 241 | 0% | 0 | 0 / 0 |
peripheral blood | 100% | 5769.09 | 926 / 929 | 0% | 0 | 0 / 0 |
skin | 31% | 53.32 | 564 / 1809 | 67% | 16.81 | 315 / 472 |
tonsil | 0% | 0 | 0 / 0 | 96% | 25.62 | 43 / 45 |
adipose | 82% | 246.67 | 991 / 1204 | 0% | 0 | 0 / 0 |
ovary | 20% | 34.34 | 36 / 180 | 52% | 3.67 | 222 / 430 |
adrenal gland | 32% | 48.10 | 83 / 258 | 15% | 0.77 | 34 / 230 |
blood vessel | 35% | 96.85 | 463 / 1335 | 0% | 0 | 0 / 0 |
heart | 18% | 31.34 | 153 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 18% | 2.25 | 14 / 80 |
brain | 4% | 5.16 | 97 / 2642 | 7% | 0.81 | 52 / 705 |
muscle | 2% | 2.87 | 16 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0006919 | Biological process | activation of cysteine-type endopeptidase activity involved in apoptotic process |
GO_0050870 | Biological process | positive regulation of T cell activation |
GO_0050862 | Biological process | positive regulation of T cell receptor signaling pathway |
GO_0030097 | Biological process | hemopoiesis |
GO_0007169 | Biological process | cell surface receptor protein tyrosine kinase signaling pathway |
GO_0051249 | Biological process | regulation of lymphocyte activation |
GO_0045087 | Biological process | innate immune response |
GO_0031295 | Biological process | T cell costimulation |
GO_0050853 | Biological process | B cell receptor signaling pathway |
GO_2001244 | Biological process | positive regulation of intrinsic apoptotic signaling pathway |
GO_1903039 | Biological process | positive regulation of leukocyte cell-cell adhesion |
GO_0051209 | Biological process | release of sequestered calcium ion into cytosol |
GO_0050852 | Biological process | T cell receptor signaling pathway |
GO_0030168 | Biological process | platelet activation |
GO_0038083 | Biological process | peptidyl-tyrosine autophosphorylation |
GO_0030217 | Biological process | T cell differentiation |
GO_0018108 | Biological process | peptidyl-tyrosine phosphorylation |
GO_0035556 | Biological process | intracellular signal transduction |
GO_0050900 | Biological process | leukocyte migration |
GO_0006882 | Biological process | intracellular zinc ion homeostasis |
GO_0034116 | Biological process | positive regulation of heterotypic cell-cell adhesion |
GO_0006468 | Biological process | protein phosphorylation |
GO_0009410 | Biological process | response to xenobiotic stimulus |
GO_0038094 | Biological process | Fc-gamma receptor signaling pathway |
GO_0001772 | Cellular component | immunological synapse |
GO_0005886 | Cellular component | plasma membrane |
GO_0045121 | Cellular component | membrane raft |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005829 | Cellular component | cytosol |
GO_0000242 | Cellular component | pericentriolar material |
GO_0016004 | Molecular function | phospholipase activator activity |
GO_0004715 | Molecular function | non-membrane spanning protein tyrosine kinase activity |
GO_0043548 | Molecular function | phosphatidylinositol 3-kinase binding |
GO_0042608 | Molecular function | T cell receptor binding |
GO_0042610 | Molecular function | CD8 receptor binding |
GO_0019903 | Molecular function | protein phosphatase binding |
GO_0004713 | Molecular function | protein tyrosine kinase activity |
GO_0019901 | Molecular function | protein kinase binding |
GO_0005102 | Molecular function | signaling receptor binding |
GO_0042802 | Molecular function | identical protein binding |
GO_0042169 | Molecular function | SH2 domain binding |
GO_0043274 | Molecular function | phospholipase binding |
GO_0005524 | Molecular function | ATP binding |
GO_0051117 | Molecular function | ATPase binding |
GO_0004722 | Molecular function | protein serine/threonine phosphatase activity |
GO_0042609 | Molecular function | CD4 receptor binding |
GO_0005515 | Molecular function | protein binding |
GO_0001784 | Molecular function | phosphotyrosine residue binding |
Gene name | LCK |
Protein name | Tyrosine-protein kinase (EC 2.7.10.2) Tyrosine-protein kinase Lck (EC 2.7.10.2) (Leukocyte C-terminal Src kinase) (LSK) (Lymphocyte cell-specific protein-tyrosine kinase) (Protein YT16) (Proto-oncogene Lck) (T cell-specific protein-tyrosine kinase) (p56-LCK) LCK proto-oncogene, Src family tyrosine kinase |
Synonyms | hCG_41609 |
Description | FUNCTION: Non-receptor tyrosine-protein kinase that plays an essential role in the selection and maturation of developing T-cells in the thymus and in the function of mature T-cells. Plays a key role in T-cell antigen receptor (TCR)-linked signal transduction pathways. Constitutively associated with the cytoplasmic portions of the CD4 and CD8 surface receptors. Association of the TCR with a peptide antigen-bound MHC complex facilitates the interaction of CD4 and CD8 with MHC class II and class I molecules, respectively, thereby recruiting the associated LCK protein to the vicinity of the TCR/CD3 complex. LCK then phosphorylates tyrosine residues within the immunoreceptor tyrosine-based activation motifs (ITAM) of the cytoplasmic tails of the TCR-gamma chains and CD3 subunits, initiating the TCR/CD3 signaling pathway. Once stimulated, the TCR recruits the tyrosine kinase ZAP70, that becomes phosphorylated and activated by LCK. Following this, a large number of signaling molecules are recruited, ultimately leading to lymphokine production. LCK also contributes to signaling by other receptor molecules. Associates directly with the cytoplasmic tail of CD2, which leads to hyperphosphorylation and activation of LCK. Also plays a role in the IL2 receptor-linked signaling pathway that controls the T-cell proliferative response. Binding of IL2 to its receptor results in increased activity of LCK. Is expressed at all stages of thymocyte development and is required for the regulation of maturation events that are governed by both pre-TCR and mature alpha beta TCR. Phosphorylates other substrates including RUNX3, PTK2B/PYK2, the microtubule-associated protein MAPT, RHOH or TYROBP. Interacts with FYB2 . . |
Accessions | Q573B4 E9PKQ8 P06239 ENST00000696991.1 E9PQ10 F8W6B9 ENST00000495610.7 ENST00000696990.1 E9PJ92 E9PAP0 A0A0S2Z3T3 E9PI33 ENST00000373557.6 A0A0S2Z3Y8 ENST00000482949.6 ENST00000333070.4 [P06239-3] ENST00000477031.6 ENST00000461712.6 ENST00000336890.10 [P06239-1] A0A8V8TKX3 A0A8V8TM09 ENST00000373562.7 |