Name | Number of supported studies | Average coverage | |
---|---|---|---|
lung | 10 studies | 31% ± 17% | |
kidney | 9 studies | 23% ± 5% | |
intestine | 9 studies | 27% ± 10% | |
peripheral blood | 8 studies | 21% ± 4% | |
eye | 7 studies | 25% ± 7% | |
brain | 5 studies | 34% ± 9% | |
liver | 4 studies | 27% ± 12% | |
pancreas | 3 studies | 36% ± 4% | |
uterus | 3 studies | 30% ± 16% | |
lymph node | 3 studies | 27% ± 13% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 4609.41 | 1445 / 1445 | 100% | 44.26 | 183 / 183 |
liver | 100% | 3196.88 | 226 / 226 | 100% | 56.43 | 406 / 406 |
ovary | 100% | 3792.52 | 180 / 180 | 100% | 70.01 | 430 / 430 |
pancreas | 100% | 3082.71 | 328 / 328 | 100% | 43.15 | 178 / 178 |
prostate | 100% | 3630.80 | 245 / 245 | 100% | 97.20 | 502 / 502 |
uterus | 100% | 2544.50 | 170 / 170 | 100% | 83.17 | 459 / 459 |
kidney | 100% | 3835.16 | 89 / 89 | 100% | 66.64 | 900 / 901 |
brain | 100% | 3926.56 | 2639 / 2642 | 100% | 49.03 | 705 / 705 |
intestine | 100% | 4507.30 | 966 / 966 | 100% | 54.09 | 526 / 527 |
adrenal gland | 100% | 4648.82 | 258 / 258 | 100% | 44.79 | 229 / 230 |
breast | 100% | 1972.99 | 459 / 459 | 100% | 55.78 | 1113 / 1118 |
thymus | 100% | 2174.30 | 651 / 653 | 100% | 55.18 | 604 / 605 |
stomach | 100% | 3217.81 | 359 / 359 | 99% | 46.48 | 284 / 286 |
bladder | 100% | 3397.43 | 21 / 21 | 99% | 73.84 | 500 / 504 |
skin | 100% | 3354.04 | 1808 / 1809 | 99% | 39.09 | 467 / 472 |
lung | 98% | 1529.80 | 566 / 578 | 100% | 64.63 | 1151 / 1155 |
lymph node | 0% | 0 | 0 / 0 | 100% | 48.06 | 29 / 29 |
spleen | 100% | 1460.00 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 88.07 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 46.23 | 1 / 1 |
muscle | 100% | 3316.15 | 801 / 803 | 0% | 0 | 0 / 0 |
adipose | 100% | 2055.01 | 1199 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 2306.32 | 1329 / 1335 | 0% | 0 | 0 / 0 |
heart | 98% | 4813.89 | 843 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 98% | 31.55 | 78 / 80 |
peripheral blood | 47% | 1867.30 | 434 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0090200 | Biological process | positive regulation of release of cytochrome c from mitochondria |
GO_0051402 | Biological process | neuron apoptotic process |
GO_0006919 | Biological process | activation of cysteine-type endopeptidase activity involved in apoptotic process |
GO_0043065 | Biological process | positive regulation of apoptotic process |
GO_0071456 | Biological process | cellular response to hypoxia |
GO_0031966 | Cellular component | mitochondrial membrane |
GO_0005829 | Cellular component | cytosol |
GO_0005739 | Cellular component | mitochondrion |
GO_0005515 | Molecular function | protein binding |
Gene name | FAM162A |
Protein name | Family with sequence similarity 162 member A Protein FAM162A (E2-induced gene 5 protein) (Growth and transformation-dependent protein) (HGTD-P) Protein FAM162A |
Synonyms | C3orf28 E2IG5 FWP001 DC16 |
Description | FUNCTION: Proposed to be involved in regulation of apoptosis; the exact mechanism may differ between cell types/tissues . May be involved in hypoxia-induced cell death of transformed cells implicating cytochrome C release and caspase activation (such as CASP9) and inducing mitochondrial permeability transition . May be involved in hypoxia-induced cell death of neuronal cells probably by promoting release of AIFM1 from mitochondria to cytoplasm and its translocation to the nucleus; however, the involvement of caspases has been reported conflictingly (By similarity). . |
Accessions | ENST00000689215.1 A0A8I5KQT5 F8W7Q4 ENST00000232125.9 ENST00000688794.1 A0A8I5KUT6 E9PH05 ENST00000684791.1 ENST00000686831.1 ENST00000692876.1 ENST00000688900.1 A0A8I5KW67 ENST00000477892.5 Q96A26 ENST00000469967.1 ENST00000685650.1 ENST00000693245.1 A0A8I5QJA3 A0A8I5KUL7 |