ZCCHC7 | OmnibusX

I. Expression across cell types

Name	Number of supported studies	Average coverage
B cell	34 studies	36% ± 17%	Explore
endothelial cell	24 studies	39% ± 13%	Explore
naive B cell	19 studies	34% ± 7%	Explore
astrocyte	19 studies	46% ± 19%	Explore
memory B cell	17 studies	23% ± 5%	Explore
oligodendrocyte	15 studies	41% ± 14%	Explore
fibroblast	15 studies	39% ± 13%	Explore
microglial cell	14 studies	43% ± 12%	Explore
oligodendrocyte precursor cell	13 studies	47% ± 16%	Explore
smooth muscle cell	12 studies	30% ± 11%	Explore
glutamatergic neuron	12 studies	58% ± 23%	Explore
GABAergic neuron	11 studies	54% ± 23%	Explore
pericyte	11 studies	36% ± 10%	Explore
macrophage	11 studies	38% ± 11%	Explore
epithelial cell	9 studies	39% ± 19%	Explore
adipocyte	9 studies	50% ± 12%	Explore
CD4-positive, alpha-beta T cell	8 studies	25% ± 8%	Explore
mast cell	8 studies	29% ± 11%	Explore
regulatory T cell	8 studies	23% ± 8%	Explore
CD8-positive, alpha-beta T cell	7 studies	24% ± 9%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	7 studies	22% ± 7%	Explore
dendritic cell	7 studies	34% ± 12%	Explore
endothelial cell of lymphatic vessel	7 studies	36% ± 9%	Explore
basal cell	7 studies	39% ± 21%	Explore
natural killer cell	7 studies	29% ± 12%	Explore
CD16-negative, CD56-bright natural killer cell, human	6 studies	24% ± 8%	Explore
effector memory CD8-positive, alpha-beta T cell	6 studies	24% ± 10%	Explore
neuron	6 studies	50% ± 21%	Explore
interneuron	6 studies	62% ± 20%	Explore
precursor B cell	6 studies	43% ± 12%	Explore
retinal cone cell	6 studies	50% ± 26%	Explore
mesothelial cell	6 studies	37% ± 13%	Explore
ciliated cell	6 studies	30% ± 12%	Explore
myeloid cell	6 studies	33% ± 12%	Explore
T cell	6 studies	37% ± 11%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	5 studies	19% ± 3%	Explore
pro-B cell	5 studies	51% ± 9%	Explore
plasma cell	5 studies	40% ± 12%	Explore
CD16-positive, CD56-dim natural killer cell, human	5 studies	20% ± 9%	Explore
retinal rod cell	5 studies	46% ± 17%	Explore
cardiac muscle cell	5 studies	36% ± 9%	Explore
abnormal cell	5 studies	36% ± 19%	Explore
monocyte	5 studies	38% ± 8%	Explore
leukocyte	5 studies	43% ± 16%	Explore
type I pneumocyte	5 studies	41% ± 7%	Explore
type II pneumocyte	5 studies	40% ± 7%	Explore
hepatocyte	4 studies	57% ± 30%	Explore
differentiation-committed oligodendrocyte precursor	4 studies	36% ± 13%	Explore
granule cell	4 studies	46% ± 12%	Explore
immature B cell	4 studies	44% ± 8%	Explore
mucosal invariant T cell	4 studies	24% ± 10%	Explore
lymphocyte	4 studies	42% ± 11%	Explore
Mueller cell	4 studies	39% ± 15%	Explore
amacrine cell	4 studies	39% ± 11%	Explore
retina horizontal cell	4 studies	39% ± 14%	Explore
club cell	4 studies	44% ± 12%	Explore
CD8-positive, alpha-beta memory T cell	4 studies	20% ± 4%	Explore
gamma-delta T cell	4 studies	21% ± 8%	Explore
mature NK T cell	3 studies	29% ± 16%	Explore
non-classical monocyte	3 studies	19% ± 1%	Explore
GABAergic interneuron	3 studies	54% ± 3%	Explore
glial cell	3 studies	30% ± 9%	Explore
progenitor cell	3 studies	40% ± 3%	Explore
vein endothelial cell	3 studies	35% ± 14%	Explore
GABAergic amacrine cell	3 studies	40% ± 12%	Explore
glycinergic amacrine cell	3 studies	39% ± 9%	Explore
retinal ganglion cell	3 studies	51% ± 17%	Explore
germinal center B cell	3 studies	35% ± 2%	Explore
endothelial cell of vascular tree	3 studies	36% ± 11%	Explore
retinal pigment epithelial cell	3 studies	44% ± 20%	Explore
ependymal cell	3 studies	47% ± 19%	Explore
alveolar macrophage	3 studies	46% ± 8%	Explore
capillary endothelial cell	3 studies	28% ± 6%	Explore
chondrocyte	3 studies	38% ± 18%	Explore
myofibroblast cell	3 studies	37% ± 16%	Explore
respiratory goblet cell	3 studies	48% ± 18%	Explore
muscle cell	3 studies	34% ± 15%	Explore
goblet cell	3 studies	43% ± 26%	Explore
transit amplifying cell	3 studies	42% ± 33%	Explore
double negative thymocyte	3 studies	20% ± 5%	Explore
effector memory CD8-positive, alpha-beta T cell, terminally differentiated	3 studies	24% ± 12%	Explore
mural cell	3 studies	42% ± 3%	Explore
mucus secreting cell	3 studies	45% ± 14%	Explore

II. Expression across tissues

Name	Number of supported studies	Average coverage
brain	17 studies	49% ± 20%	Explore
eye	5 studies	50% ± 12%	Explore
lung	5 studies	35% ± 10%	Explore
heart	4 studies	36% ± 6%	Explore
peripheral blood	3 studies	36% ± 25%	Explore
liver	3 studies	44% ± 18%	Explore
bone marrow	3 studies	23% ± 8%	Explore
intestine	3 studies	18% ± 2%	Explore
adipose	3 studies	49% ± 17%	Explore
kidney	3 studies	35% ± 6%	Explore

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
breast	100%	1108.21	459 / 459	100%	26.61	1118 / 1118
esophagus	100%	835.14	1445 / 1445	100%	18.03	183 / 183
ovary	100%	1349.97	180 / 180	100%	19.54	430 / 430
prostate	100%	998.13	245 / 245	100%	17.53	502 / 502
uterus	100%	1191.06	170 / 170	100%	20.66	459 / 459
bladder	100%	1037.29	21 / 21	100%	19.37	503 / 504
thymus	100%	1115.60	653 / 653	100%	20.71	603 / 605
brain	100%	587.86	2633 / 2642	100%	16.53	705 / 705
lung	100%	883.84	576 / 578	100%	19.94	1155 / 1155
stomach	100%	735.79	359 / 359	100%	20.48	285 / 286
intestine	100%	1022.09	966 / 966	100%	22.50	525 / 527
pancreas	100%	820.13	328 / 328	99%	16.39	177 / 178
adrenal gland	100%	894.03	258 / 258	98%	15.95	226 / 230
kidney	100%	682.35	89 / 89	98%	14.34	883 / 901
liver	100%	493.86	226 / 226	96%	9.86	390 / 406
skin	100%	1174.79	1809 / 1809	93%	15.35	440 / 472
adipose	100%	1038.63	1204 / 1204	0%	0	0 / 0
blood vessel	100%	1033.14	1335 / 1335	0%	0	0 / 0
lymph node	0%	0	0 / 0	100%	48.76	29 / 29
spleen	100%	1331.70	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	18.75	45 / 45
ureter	0%	0	0 / 0	100%	8.23	1 / 1
muscle	99%	460.17	795 / 803	0%	0	0 / 0
heart	97%	449.82	835 / 861	0%	0	0 / 0
peripheral blood	96%	1409.68	894 / 929	0%	0	0 / 0
eye	0%	0	0 / 0	83%	9.38	66 / 80
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0

III. Associated gene sets

GO_0071038	Biological process	TRAMP-dependent tRNA surveillance pathway
GO_0071031	Biological process	nuclear mRNA surveillance of mRNA 3'-end processing
GO_0071036	Biological process	nuclear polyadenylation-dependent snoRNA catabolic process
GO_0071035	Biological process	nuclear polyadenylation-dependent rRNA catabolic process
GO_0071039	Biological process	nuclear polyadenylation-dependent CUT catabolic process
GO_0071037	Biological process	nuclear polyadenylation-dependent snRNA catabolic process
GO_0031499	Cellular component	TRAMP complex
GO_0005730	Cellular component	nucleolus
GO_0005829	Cellular component	cytosol
GO_0005515	Molecular function	protein binding
GO_0008270	Molecular function	zinc ion binding
GO_0003723	Molecular function	RNA binding

Gene name	ZCCHC7
Protein name	Zinc finger CCHC-type containing 7 Zinc finger CCHC domain-containing protein 7 (TRAMP-like complex RNA-binding factor ZCCHC7)
Synonyms	HSPC086 hCG_1811263
Description
Accessions	ENST00000336755.10 [Q8N3Z6-1] B4E024 Q05DN1 Q8N3Z6 ENST00000534928.5 [Q8N3Z6-1] X6R4A7 ENST00000322831.6

ZCCHC7 report

I. Expression across cell types

II. Expression across tissues

III. Associated gene sets

IV. Literature review