SVIP report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
CD4-positive, alpha-beta T cell	20 studies	24% ± 8%	Explore
endothelial cell	17 studies	27% ± 12%	Explore
B cell	15 studies	20% ± 5%	Explore
CD8-positive, alpha-beta T cell	15 studies	22% ± 4%	Explore
T cell	13 studies	25% ± 7%	Explore
endothelial cell of lymphatic vessel	13 studies	23% ± 7%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	12 studies	25% ± 4%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	12 studies	24% ± 6%	Explore
gamma-delta T cell	11 studies	21% ± 5%	Explore
regulatory T cell	11 studies	21% ± 5%	Explore
plasmacytoid dendritic cell	11 studies	28% ± 9%	Explore
mast cell	10 studies	27% ± 5%	Explore
oligodendrocyte	10 studies	31% ± 16%	Explore
mucosal invariant T cell	9 studies	21% ± 4%	Explore
plasma cell	9 studies	32% ± 10%	Explore
natural killer cell	8 studies	19% ± 5%	Explore
platelet	8 studies	34% ± 8%	Explore
memory B cell	8 studies	21% ± 5%	Explore
naive B cell	7 studies	18% ± 2%	Explore
epithelial cell	7 studies	42% ± 19%	Explore
kidney loop of Henle epithelial cell	6 studies	29% ± 8%	Explore
CD4-positive, alpha-beta memory T cell	6 studies	25% ± 5%	Explore
CD8-positive, alpha-beta memory T cell	6 studies	26% ± 6%	Explore
effector memory CD8-positive, alpha-beta T cell	5 studies	25% ± 9%	Explore
renal alpha-intercalated cell	5 studies	35% ± 5%	Explore
capillary endothelial cell	5 studies	17% ± 2%	Explore
pancreatic A cell	4 studies	42% ± 6%	Explore
type B pancreatic cell	4 studies	60% ± 13%	Explore
hematopoietic precursor cell	4 studies	40% ± 15%	Explore
endothelial cell of artery	4 studies	22% ± 8%	Explore
goblet cell	4 studies	25% ± 9%	Explore
endothelial cell of vascular tree	4 studies	19% ± 2%	Explore
ciliated cell	4 studies	41% ± 10%	Explore
effector memory CD4-positive, alpha-beta T cell	4 studies	28% ± 12%	Explore
T follicular helper cell	4 studies	31% ± 9%	Explore
pancreatic D cell	3 studies	66% ± 10%	Explore
CD16-negative, CD56-bright natural killer cell, human	3 studies	18% ± 4%	Explore
transit amplifying cell	3 studies	19% ± 1%	Explore
abnormal cell	3 studies	29% ± 8%	Explore
retinal rod cell	3 studies	26% ± 9%	Explore
secretory cell	3 studies	28% ± 15%	Explore
erythroblast	3 studies	38% ± 17%	Explore
CD4-positive helper T cell	3 studies	25% ± 7%	Explore
innate lymphoid cell	3 studies	28% ± 6%	Explore
luminal hormone-sensing cell of mammary gland	3 studies	31% ± 7%	Explore
glutamatergic neuron	3 studies	38% ± 17%	Explore
granulocyte monocyte progenitor cell	3 studies	32% ± 9%	Explore
enteroendocrine cell	3 studies	33% ± 13%	Explore
intestinal crypt stem cell	3 studies	21% ± 4%	Explore
hematopoietic stem cell	3 studies	25% ± 8%	Explore
central memory CD4-positive, alpha-beta T cell	3 studies	24% ± 2%	Explore
double negative thymocyte	3 studies	26% ± 10%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
peripheral blood	8 studies	21% ± 5%	Explore
lung	8 studies	21% ± 11%	Explore
pancreas	4 studies	41% ± 13%	Explore
brain	4 studies	31% ± 12%	Explore
intestine	4 studies	19% ± 1%	Explore
kidney	3 studies	16% ± 1%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
prostate	100%	1809.17	245 / 245	100%	39.98	502 / 502
thymus	100%	2175.37	653 / 653	100%	44.91	604 / 605
ovary	100%	1610.66	180 / 180	99%	18.42	427 / 430
kidney	100%	1989.40	89 / 89	98%	20.40	883 / 901
breast	99%	1133.14	456 / 459	98%	29.21	1098 / 1118
intestine	100%	1152.83	966 / 966	98%	21.83	514 / 527
pancreas	99%	1039.33	325 / 328	98%	23.38	175 / 178
stomach	100%	1543.87	359 / 359	97%	22.07	278 / 286
adrenal gland	100%	1154.38	258 / 258	97%	26.65	222 / 230
brain	100%	2954.72	2640 / 2642	91%	13.65	639 / 705
bladder	100%	1119.95	21 / 21	90%	16.86	454 / 504
lung	99%	1141.05	572 / 578	91%	17.77	1048 / 1155
uterus	98%	1151.98	167 / 170	79%	15.51	361 / 459
skin	81%	683.81	1472 / 1809	92%	15.93	435 / 472
esophagus	100%	1142.39	1445 / 1445	73%	13.52	134 / 183
liver	88%	504.92	198 / 226	80%	8.93	325 / 406
spleen	100%	1270.37	241 / 241	0%	0	0 / 0
blood vessel	100%	1690.21	1333 / 1335	0%	0	0 / 0
muscle	98%	932.52	789 / 803	0%	0	0 / 0
adipose	96%	716.57	1155 / 1204	0%	0	0 / 0
heart	95%	974.66	821 / 861	0%	0	0 / 0
lymph node	0%	0	0 / 0	90%	13.02	26 / 29
tonsil	0%	0	0 / 0	80%	12.65	36 / 45
peripheral blood	61%	859.10	571 / 929	0%	0	0 / 0
eye	0%	0	0 / 0	34%	2.40	27 / 80
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1