SNRPA1 | OmnibusX

I. Expression across cell types

Name	Number of supported studies	Average coverage
B cell	21 studies	22% ± 6%	Explore
CD4-positive, alpha-beta T cell	17 studies	27% ± 11%	Explore
CD8-positive, alpha-beta T cell	17 studies	26% ± 9%	Explore
natural killer cell	16 studies	25% ± 9%	Explore
regulatory T cell	15 studies	24% ± 8%	Explore
naive B cell	12 studies	22% ± 5%	Explore
endothelial cell	12 studies	24% ± 7%	Explore
T cell	11 studies	22% ± 5%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	11 studies	21% ± 6%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	11 studies	23% ± 5%	Explore
gamma-delta T cell	11 studies	25% ± 13%	Explore
CD16-negative, CD56-bright natural killer cell, human	10 studies	21% ± 3%	Explore
memory B cell	10 studies	23% ± 7%	Explore
plasmacytoid dendritic cell	10 studies	27% ± 8%	Explore
CD16-positive, CD56-dim natural killer cell, human	9 studies	23% ± 4%	Explore
mucosal invariant T cell	9 studies	22% ± 3%	Explore
epithelial cell	9 studies	34% ± 19%	Explore
plasmablast	8 studies	32% ± 20%	Explore
CD4-positive, alpha-beta memory T cell	8 studies	23% ± 2%	Explore
mature NK T cell	8 studies	20% ± 3%	Explore
CD8-positive, alpha-beta memory T cell	7 studies	25% ± 6%	Explore
fibroblast	7 studies	25% ± 7%	Explore
pericyte	6 studies	20% ± 5%	Explore
ciliated cell	6 studies	31% ± 7%	Explore
basal cell	6 studies	31% ± 11%	Explore
effector CD8-positive, alpha-beta T cell	5 studies	29% ± 7%	Explore
effector memory CD8-positive, alpha-beta T cell	5 studies	25% ± 7%	Explore
precursor B cell	5 studies	28% ± 7%	Explore
T follicular helper cell	5 studies	21% ± 4%	Explore
effector memory CD4-positive, alpha-beta T cell	5 studies	25% ± 9%	Explore
glutamatergic neuron	5 studies	34% ± 16%	Explore
dendritic cell	5 studies	34% ± 18%	Explore
goblet cell	5 studies	24% ± 7%	Explore
hematopoietic precursor cell	4 studies	33% ± 16%	Explore
non-classical monocyte	4 studies	34% ± 10%	Explore
conventional dendritic cell	4 studies	34% ± 16%	Explore
exhausted T cell	4 studies	24% ± 5%	Explore
pro-B cell	4 studies	26% ± 3%	Explore
effector CD4-positive, alpha-beta T cell	4 studies	23% ± 1%	Explore
abnormal cell	4 studies	21% ± 6%	Explore
interneuron	4 studies	27% ± 13%	Explore
oligodendrocyte	4 studies	16% ± 1%	Explore
effector memory CD8-positive, alpha-beta T cell, terminally differentiated	4 studies	18% ± 2%	Explore
type B pancreatic cell	3 studies	25% ± 7%	Explore
leukocyte	3 studies	24% ± 7%	Explore
classical monocyte	3 studies	28% ± 8%	Explore
neural crest cell	3 studies	21% ± 3%	Explore
placental villous trophoblast	3 studies	29% ± 3%	Explore
lymphocyte	3 studies	27% ± 5%	Explore
myofibroblast cell	3 studies	17% ± 1%	Explore
smooth muscle cell	3 studies	18% ± 1%	Explore
plasma cell	3 studies	38% ± 14%	Explore
immature B cell	3 studies	23% ± 2%	Explore
erythroblast	3 studies	35% ± 16%	Explore
innate lymphoid cell	3 studies	18% ± 3%	Explore
macrophage	3 studies	21% ± 2%	Explore
endothelial cell of vascular tree	3 studies	22% ± 5%	Explore
GABAergic neuron	3 studies	33% ± 7%	Explore
intestinal crypt stem cell	3 studies	20% ± 3%	Explore
club cell	3 studies	20% ± 4%	Explore
erythrocyte	3 studies	31% ± 15%	Explore
transit amplifying cell	3 studies	31% ± 9%	Explore
neuron	3 studies	25% ± 7%	Explore
T-helper 1 cell	3 studies	25% ± 5%	Explore
double negative thymocyte	3 studies	32% ± 12%	Explore
oligodendrocyte precursor cell	3 studies	20% ± 2%	Explore

II. Expression across tissues

Name	Number of supported studies	Average coverage
peripheral blood	12 studies	24% ± 6%	Explore
brain	7 studies	26% ± 11%	Explore
lung	5 studies	25% ± 10%	Explore
placenta	3 studies	19% ± 0%	Explore
eye	3 studies	22% ± 5%	Explore
lymph node	3 studies	17% ± 1%	Explore
liver	3 studies	31% ± 17%	Explore

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
bladder	100%	1364.14	21 / 21	100%	36.71	504 / 504
esophagus	100%	1336.19	1445 / 1445	100%	33.39	183 / 183
lung	100%	1654.47	578 / 578	100%	34.59	1155 / 1155
ovary	100%	1311.84	180 / 180	100%	29.71	430 / 430
uterus	100%	1375.08	170 / 170	100%	43.98	459 / 459
intestine	100%	1508.60	966 / 966	100%	33.99	526 / 527
thymus	100%	1471.98	653 / 653	100%	22.42	603 / 605
stomach	100%	1198.42	359 / 359	100%	29.67	285 / 286
prostate	100%	1414.16	245 / 245	100%	22.76	500 / 502
liver	100%	902.58	226 / 226	100%	18.24	404 / 406
breast	100%	1526.43	459 / 459	99%	31.84	1112 / 1118
pancreas	100%	913.95	328 / 328	99%	26.69	177 / 178
skin	100%	1868.77	1809 / 1809	99%	24.99	469 / 472
brain	99%	1069.85	2617 / 2642	100%	22.63	705 / 705
kidney	100%	1328.48	89 / 89	99%	16.35	890 / 901
adrenal gland	100%	1111.34	258 / 258	97%	16.86	222 / 230
adipose	100%	1378.54	1204 / 1204	0%	0	0 / 0
lymph node	0%	0	0 / 0	100%	49.86	29 / 29
spleen	100%	2075.54	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	36.76	45 / 45
ureter	0%	0	0 / 0	100%	23.94	1 / 1
blood vessel	100%	1279.16	1333 / 1335	0%	0	0 / 0
muscle	99%	848.04	798 / 803	0%	0	0 / 0
heart	98%	969.53	848 / 861	0%	0	0 / 0
eye	0%	0	0 / 0	86%	10.86	69 / 80
peripheral blood	85%	1334.34	792 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0

III. Associated gene sets

GO_0000398	Biological process	mRNA splicing, via spliceosome
GO_0007283	Biological process	spermatogenesis
GO_0008380	Biological process	RNA splicing
GO_1903241	Biological process	U2-type prespliceosome assembly
GO_0005686	Cellular component	U2 snRNP
GO_0016607	Cellular component	nuclear speck
GO_0071013	Cellular component	catalytic step 2 spliceosome
GO_0016604	Cellular component	nuclear body
GO_0005654	Cellular component	nucleoplasm
GO_0071007	Cellular component	U2-type catalytic step 2 spliceosome
GO_0030532	Cellular component	small nuclear ribonucleoprotein complex
GO_0005681	Cellular component	spliceosomal complex
GO_0071005	Cellular component	U2-type precatalytic spliceosome
GO_0005684	Cellular component	U2-type spliceosomal complex
GO_0005634	Cellular component	nucleus
GO_0030620	Molecular function	U2 snRNA binding
GO_0003723	Molecular function	RNA binding
GO_0005515	Molecular function	protein binding

IV. Literature review

[source]

Gene name	SNRPA1
Protein name	SNRPA1 protein (Small nuclear ribonucleoprotein polypeptide A', isoform CRA_d) (cDNA FLJ75425, highly similar to Homo sapiens small nuclear ribonucleoprotein polypeptide A', mRNA) Small nuclear ribonucleoprotein polypeptide A' U2 small nuclear ribonucleoprotein A' (U2 snRNP A')
Synonyms	hCG_1992004
Description	FUNCTION: Involved in pre-mRNA splicing as component of the spliceosome . Associated with sn-RNP U2, where it contributes to the binding of stem loop IV of U2 snRNA . .
Accessions	ENST00000559686.3 Q6NVW9 H0YMA0 ENST00000559309.5 ENST00000560496.5 H0YKK0 H0YLR3 ENST00000254193.11 P09661

SNRPA1 report

I. Expression across cell types

II. Expression across tissues

III. Associated gene sets

IV. Literature review