Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
adrenal gland | 100% | 13591.49 | 258 / 258 | 100% | 92.72 | 230 / 230 |
breast | 100% | 10457.44 | 459 / 459 | 100% | 113.07 | 1118 / 1118 |
esophagus | 100% | 12769.68 | 1445 / 1445 | 100% | 94.76 | 183 / 183 |
kidney | 100% | 12271.85 | 89 / 89 | 100% | 84.47 | 901 / 901 |
pancreas | 100% | 5527.57 | 328 / 328 | 100% | 87.29 | 178 / 178 |
prostate | 100% | 10902.66 | 245 / 245 | 100% | 127.92 | 502 / 502 |
stomach | 100% | 9205.04 | 359 / 359 | 100% | 74.72 | 286 / 286 |
thymus | 100% | 9884.91 | 653 / 653 | 100% | 100.26 | 605 / 605 |
uterus | 100% | 9819.35 | 170 / 170 | 100% | 92.66 | 459 / 459 |
skin | 100% | 10446.15 | 1808 / 1809 | 100% | 93.59 | 472 / 472 |
lung | 100% | 11456.01 | 577 / 578 | 100% | 86.85 | 1155 / 1155 |
intestine | 100% | 11000.95 | 966 / 966 | 100% | 81.43 | 526 / 527 |
bladder | 100% | 10780.95 | 21 / 21 | 100% | 95.25 | 503 / 504 |
ovary | 100% | 9234.18 | 180 / 180 | 100% | 75.94 | 429 / 430 |
liver | 100% | 5770.02 | 225 / 226 | 100% | 63.90 | 406 / 406 |
brain | 100% | 8987.60 | 2630 / 2642 | 100% | 90.17 | 705 / 705 |
adipose | 100% | 11089.10 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 85.95 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 85.40 | 29 / 29 |
muscle | 100% | 24358.12 | 803 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 100% | 33630.24 | 929 / 929 | 0% | 0 | 0 / 0 |
spleen | 100% | 11588.46 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 80.41 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 45.41 | 1 / 1 |
blood vessel | 100% | 11118.85 | 1334 / 1335 | 0% | 0 | 0 / 0 |
heart | 98% | 13692.37 | 846 / 861 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0051865 | Biological process | protein autoubiquitination |
GO_0031643 | Biological process | positive regulation of myelination |
GO_0006513 | Biological process | protein monoubiquitination |
GO_0045893 | Biological process | positive regulation of DNA-templated transcription |
GO_0010626 | Biological process | negative regulation of Schwann cell proliferation |
GO_1990116 | Biological process | ribosome-associated ubiquitin-dependent protein catabolic process |
GO_0099527 | Biological process | postsynapse to nucleus signaling pathway |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0098978 | Cellular component | glutamatergic synapse |
GO_0022626 | Cellular component | cytosolic ribosome |
GO_0099147 | Cellular component | extrinsic component of postsynaptic density membrane |
GO_0005737 | Cellular component | cytoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0061630 | Molecular function | ubiquitin protein ligase activity |
GO_0005515 | Molecular function | protein binding |
GO_0000976 | Molecular function | transcription cis-regulatory region binding |
GO_0046872 | Molecular function | metal ion binding |
Gene name | RNF10 |
Protein name | E3 ubiquitin-protein ligase RNF10 (RING finger protein 10) E3 ubiquitin-protein ligase RNF10 (EC 2.3.2.27) (RING finger protein 10) Ring finger protein 10 |
Synonyms | KIAA0262 hCG_27770 RIE2 |
Description | FUNCTION: E3 ubiquitin-protein ligase that catalyzes monoubiquitination of 40S ribosomal proteins RPS2/us5 and RPS3/us3 in response to ribosome stalling . Part of a ribosome quality control that takes place when ribosomes have stalled during translation initiation (iRQC): RNF10 acts by mediating monoubiquitination of RPS2/us5 and RPS3/us3, promoting their degradation by the proteasome . Also promotes ubiquitination of 40S ribosomal proteins in response to ribosome stalling during translation elongation . The action of RNF10 in iRQC is counteracted by USP10 . May also act as a transcriptional factor involved in the regulation of MAG (Myelin-associated glycoprotein) expression (By similarity). Acts as a regulator of Schwann cell differentiation and myelination (By similarity). . |
Accessions | ENST00000538796.5 H0YGL7 H0YG28 ENST00000545419.5 H0YGX5 ENST00000538254.1 ENST00000325954.9 [Q8N5U6-1] H0YF69 ENST00000537740.1 A0A024RBP0 A0A0G2JKT9 H0YFQ9 F5H5Z1 F5H3A4 ENST00000536869.5 ENST00000542438.1 ENST00000540046.5 ENST00000546262.6 F5H510 ENST00000413266.6 [Q8N5U6-2] Q8N5U6 ENST00000539486.1 ENST00000542207.5 ENST00000537997.1 F5H5P6 H0YFN9 |