Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
bladder | 100% | 9281.76 | 21 / 21 | 100% | 18.63 | 504 / 504 |
breast | 100% | 10693.00 | 459 / 459 | 100% | 23.34 | 1118 / 1118 |
esophagus | 100% | 8444.91 | 1445 / 1445 | 100% | 17.33 | 183 / 183 |
intestine | 100% | 10026.79 | 966 / 966 | 100% | 16.80 | 527 / 527 |
prostate | 100% | 13425.76 | 245 / 245 | 100% | 26.47 | 502 / 502 |
thymus | 100% | 13038.45 | 653 / 653 | 100% | 27.46 | 604 / 605 |
uterus | 100% | 13984.42 | 170 / 170 | 100% | 19.98 | 458 / 459 |
lung | 100% | 9562.83 | 578 / 578 | 99% | 16.69 | 1148 / 1155 |
stomach | 100% | 7119.88 | 359 / 359 | 99% | 15.88 | 284 / 286 |
skin | 100% | 8762.79 | 1809 / 1809 | 99% | 21.17 | 468 / 472 |
pancreas | 100% | 5671.21 | 328 / 328 | 99% | 21.58 | 176 / 178 |
adrenal gland | 100% | 6903.83 | 258 / 258 | 99% | 16.31 | 227 / 230 |
brain | 99% | 6407.63 | 2604 / 2642 | 100% | 31.07 | 705 / 705 |
ovary | 100% | 16157.80 | 180 / 180 | 98% | 15.98 | 422 / 430 |
kidney | 100% | 7442.72 | 89 / 89 | 97% | 15.07 | 870 / 901 |
liver | 100% | 4094.12 | 225 / 226 | 95% | 9.39 | 386 / 406 |
adipose | 100% | 9842.33 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 26.20 | 29 / 29 |
spleen | 100% | 14011.83 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 14.89 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 9.13 | 1 / 1 |
blood vessel | 100% | 7619.26 | 1334 / 1335 | 0% | 0 | 0 / 0 |
muscle | 99% | 4727.24 | 798 / 803 | 0% | 0 | 0 / 0 |
heart | 99% | 5093.22 | 855 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 98% | 7031.83 | 906 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 94% | 13.10 | 75 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0000398 | Biological process | mRNA splicing, via spliceosome |
GO_0006915 | Biological process | apoptotic process |
GO_0008285 | Biological process | negative regulation of cell population proliferation |
GO_0000245 | Biological process | spliceosomal complex assembly |
GO_0043065 | Biological process | positive regulation of apoptotic process |
GO_0000381 | Biological process | regulation of alternative mRNA splicing, via spliceosome |
GO_0006396 | Biological process | RNA processing |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005681 | Cellular component | spliceosomal complex |
GO_0005634 | Cellular component | nucleus |
GO_0003677 | Molecular function | DNA binding |
GO_0005515 | Molecular function | protein binding |
GO_0003729 | Molecular function | mRNA binding |
GO_0046872 | Molecular function | metal ion binding |
GO_0003723 | Molecular function | RNA binding |
Gene name | RBM5 |
Protein name | RNA-binding protein 5 (Protein G15) (Putative tumor suppressor LUCA15) (RNA-binding motif protein 5) (Renal carcinoma antigen NY-REN-9) RNA binding motif protein 5 RNA binding motif protein 5 isoform 1 RNA binding motif protein 5 isoform 2 RNA-binding protein 5 variant |
Synonyms | variant LUCA15 H37 |
Description | FUNCTION: Component of the spliceosome A complex. Regulates alternative splicing of a number of mRNAs. May modulate splice site pairing after recruitment of the U1 and U2 snRNPs to the 5' and 3' splice sites of the intron. May both positively and negatively regulate apoptosis by regulating the alternative splicing of several genes involved in this process, including FAS and CASP2/caspase-2. In the case of FAS, promotes exclusion of exon 6 thereby producing a soluble form of FAS that inhibits apoptosis. In the case of CASP2/caspase-2, promotes exclusion of exon 9 thereby producing a catalytically active form of CASP2/Caspase-2 that induces apoptosis. . |
Accessions | ENST00000347869.8 [P52756-1] ENST00000437500.5 ENST00000438369.5 A0A0S2Z5U0 C9J9P7 C9JR02 ENST00000395174.6 H7BYM9 ENST00000469838.5 [P52756-2] C9JFQ5 ENST00000417905.1 ENST00000404526.6 F8WE23 ENST00000441305.5 A0A0S2Z549 F8W910 E1CJT4 P52756 |