RAB5C report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
endothelial cell	31 studies	35% ± 15%	Explore
macrophage	29 studies	40% ± 13%	Explore
classical monocyte	24 studies	34% ± 16%	Explore
fibroblast	23 studies	27% ± 11%	Explore
conventional dendritic cell	22 studies	37% ± 17%	Explore
natural killer cell	21 studies	29% ± 9%	Explore
non-classical monocyte	21 studies	42% ± 17%	Explore
pericyte	21 studies	28% ± 10%	Explore
B cell	19 studies	26% ± 11%	Explore
CD4-positive, alpha-beta T cell	18 studies	24% ± 8%	Explore
smooth muscle cell	17 studies	24% ± 8%	Explore
CD8-positive, alpha-beta T cell	17 studies	27% ± 11%	Explore
monocyte	16 studies	31% ± 11%	Explore
endothelial cell of lymphatic vessel	16 studies	37% ± 12%	Explore
T cell	15 studies	21% ± 5%	Explore
dendritic cell	15 studies	40% ± 24%	Explore
naive B cell	14 studies	21% ± 5%	Explore
memory B cell	13 studies	21% ± 4%	Explore
regulatory T cell	13 studies	24% ± 6%	Explore
plasmacytoid dendritic cell	12 studies	33% ± 11%	Explore
CD16-positive, CD56-dim natural killer cell, human	12 studies	28% ± 11%	Explore
capillary endothelial cell	12 studies	33% ± 7%	Explore
gamma-delta T cell	11 studies	25% ± 11%	Explore
endothelial cell of vascular tree	11 studies	32% ± 12%	Explore
myeloid cell	11 studies	38% ± 13%	Explore
mature NK T cell	10 studies	29% ± 6%	Explore
connective tissue cell	10 studies	27% ± 9%	Explore
endothelial cell of artery	10 studies	35% ± 10%	Explore
vein endothelial cell	10 studies	34% ± 10%	Explore
CD16-negative, CD56-bright natural killer cell, human	9 studies	25% ± 9%	Explore
myofibroblast cell	9 studies	25% ± 9%	Explore
epithelial cell	9 studies	37% ± 21%	Explore
basal cell	9 studies	33% ± 19%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	8 studies	19% ± 5%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	8 studies	26% ± 6%	Explore
CD8-positive, alpha-beta memory T cell	8 studies	26% ± 10%	Explore
CD4-positive, alpha-beta memory T cell	7 studies	23% ± 7%	Explore
alveolar macrophage	6 studies	33% ± 6%	Explore
mononuclear phagocyte	6 studies	40% ± 16%	Explore
effector memory CD8-positive, alpha-beta T cell	6 studies	28% ± 12%	Explore
epithelial cell of proximal tubule	6 studies	32% ± 6%	Explore
goblet cell	6 studies	24% ± 11%	Explore
enterocyte	5 studies	23% ± 4%	Explore
mucosal invariant T cell	5 studies	25% ± 3%	Explore
precursor B cell	5 studies	25% ± 10%	Explore
innate lymphoid cell	5 studies	25% ± 9%	Explore
astrocyte	5 studies	30% ± 13%	Explore
ciliated cell	5 studies	43% ± 13%	Explore
T follicular helper cell	5 studies	20% ± 4%	Explore
effector memory CD4-positive, alpha-beta T cell	5 studies	29% ± 12%	Explore
abnormal cell	5 studies	23% ± 5%	Explore
secretory cell	5 studies	35% ± 20%	Explore
type I pneumocyte	4 studies	28% ± 12%	Explore
hematopoietic precursor cell	4 studies	35% ± 16%	Explore
effector CD8-positive, alpha-beta T cell	4 studies	27% ± 7%	Explore
leukocyte	4 studies	34% ± 8%	Explore
kidney loop of Henle epithelial cell	4 studies	29% ± 6%	Explore
kidney distal convoluted tubule epithelial cell	4 studies	28% ± 6%	Explore
microglial cell	4 studies	30% ± 12%	Explore
type II pneumocyte	4 studies	31% ± 18%	Explore
luminal hormone-sensing cell of mammary gland	4 studies	28% ± 11%	Explore
enteroendocrine cell	4 studies	30% ± 13%	Explore
mast cell	4 studies	18% ± 2%	Explore
plasma cell	3 studies	27% ± 13%	Explore
plasmablast	3 studies	53% ± 2%	Explore
pancreatic A cell	3 studies	43% ± 17%	Explore
exhausted T cell	3 studies	37% ± 5%	Explore
glomerular endothelial cell	3 studies	31% ± 4%	Explore
renal alpha-intercalated cell	3 studies	27% ± 5%	Explore
mesothelial cell	3 studies	32% ± 22%	Explore
neural crest cell	3 studies	18% ± 1%	Explore
retinal ganglion cell	3 studies	60% ± 24%	Explore
placental villous trophoblast	3 studies	36% ± 11%	Explore
hematopoietic stem cell	3 studies	20% ± 3%	Explore
lymphocyte	3 studies	34% ± 1%	Explore
megakaryocyte	3 studies	21% ± 3%	Explore
pro-B cell	3 studies	22% ± 1%	Explore
club cell	3 studies	24% ± 7%	Explore
amacrine cell	3 studies	36% ± 11%	Explore
retina horizontal cell	3 studies	26% ± 14%	Explore
tissue-resident macrophage	3 studies	32% ± 9%	Explore
intraepithelial lymphocyte	3 studies	23% ± 4%	Explore
Mueller cell	3 studies	20% ± 5%	Explore
germinal center B cell	3 studies	20% ± 3%	Explore
intermediate monocyte	3 studies	51% ± 23%	Explore
neuron	3 studies	41% ± 20%	Explore
oligodendrocyte precursor cell	3 studies	24% ± 11%	Explore
neutrophil	3 studies	22% ± 4%	Explore
T-helper 17 cell	3 studies	24% ± 6%	Explore
immature B cell	3 studies	20% ± 4%	Explore
effector memory CD8-positive, alpha-beta T cell, terminally differentiated	3 studies	21% ± 4%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
lung	12 studies	34% ± 15%	Explore
peripheral blood	11 studies	33% ± 12%	Explore
intestine	8 studies	25% ± 14%	Explore
kidney	6 studies	27% ± 4%	Explore
eye	4 studies	24% ± 9%	Explore
placenta	4 studies	30% ± 10%	Explore
bone marrow	4 studies	21% ± 7%	Explore
lymph node	4 studies	19% ± 3%	Explore
brain	4 studies	29% ± 5%	Explore
pancreas	3 studies	37% ± 15%	Explore
uterus	3 studies	32% ± 11%	Explore
breast	3 studies	25% ± 5%	Explore
liver	3 studies	34% ± 20%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
esophagus	100%	6258.97	1445 / 1445	100%	53.17	183 / 183
intestine	100%	6855.97	966 / 966	100%	62.92	527 / 527
lung	100%	8926.06	578 / 578	100%	57.80	1155 / 1155
ovary	100%	5612.44	180 / 180	100%	48.35	430 / 430
stomach	100%	6267.68	359 / 359	100%	66.75	286 / 286
brain	100%	5779.39	2640 / 2642	100%	77.53	705 / 705
thymus	100%	7902.43	653 / 653	100%	66.94	604 / 605
bladder	100%	6889.43	21 / 21	100%	60.84	503 / 504
skin	100%	7289.79	1809 / 1809	100%	70.11	471 / 472
uterus	100%	6749.11	170 / 170	100%	56.87	458 / 459
kidney	100%	9153.89	89 / 89	100%	53.14	899 / 901
prostate	100%	5419.29	245 / 245	100%	46.35	500 / 502
liver	100%	3915.66	225 / 226	100%	42.87	405 / 406
breast	100%	8793.47	459 / 459	99%	67.79	1110 / 1118
pancreas	98%	2785.60	322 / 328	100%	58.64	178 / 178
adrenal gland	100%	8196.84	258 / 258	97%	34.58	222 / 230
adipose	100%	9418.29	1204 / 1204	0%	0	0 / 0
blood vessel	100%	7555.08	1335 / 1335	0%	0	0 / 0
eye	0%	0	0 / 0	100%	50.68	80 / 80
lymph node	0%	0	0 / 0	100%	62.60	29 / 29
spleen	100%	8232.64	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	48.60	45 / 45
ureter	0%	0	0 / 0	100%	20.78	1 / 1
peripheral blood	100%	7467.81	927 / 929	0%	0	0 / 0
heart	99%	3142.18	850 / 861	0%	0	0 / 0
muscle	88%	1835.60	708 / 803	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0