Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 3202.22 | 1445 / 1445 | 100% | 30.62 | 183 / 183 |
skin | 100% | 5442.59 | 1809 / 1809 | 99% | 32.08 | 469 / 472 |
breast | 100% | 3809.02 | 459 / 459 | 99% | 27.49 | 1110 / 1118 |
uterus | 100% | 3950.81 | 170 / 170 | 99% | 37.25 | 455 / 459 |
intestine | 100% | 3471.09 | 966 / 966 | 99% | 23.43 | 522 / 527 |
stomach | 100% | 2573.87 | 359 / 359 | 99% | 24.23 | 283 / 286 |
lung | 100% | 4512.66 | 578 / 578 | 99% | 24.64 | 1139 / 1155 |
ovary | 100% | 3004.24 | 180 / 180 | 97% | 20.60 | 419 / 430 |
bladder | 100% | 3479.48 | 21 / 21 | 97% | 22.59 | 490 / 504 |
brain | 98% | 2948.08 | 2581 / 2642 | 99% | 22.18 | 700 / 705 |
thymus | 100% | 3186.89 | 652 / 653 | 97% | 16.45 | 584 / 605 |
pancreas | 90% | 1112.44 | 296 / 328 | 97% | 13.47 | 172 / 178 |
prostate | 100% | 2972.06 | 245 / 245 | 87% | 8.78 | 436 / 502 |
adrenal gland | 100% | 2415.98 | 258 / 258 | 81% | 9.36 | 186 / 230 |
kidney | 99% | 2140.64 | 88 / 89 | 79% | 8.09 | 709 / 901 |
liver | 94% | 1354.64 | 213 / 226 | 62% | 7.82 | 251 / 406 |
adipose | 100% | 3436.52 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 45.68 | 29 / 29 |
spleen | 100% | 4969.16 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 43.96 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 6.33 | 1 / 1 |
blood vessel | 100% | 2549.62 | 1333 / 1335 | 0% | 0 | 0 / 0 |
heart | 97% | 1815.67 | 837 / 861 | 0% | 0 | 0 / 0 |
muscle | 88% | 1137.62 | 707 / 803 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 85% | 8.91 | 68 / 80 |
peripheral blood | 84% | 4388.97 | 778 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0032259 | Biological process | methylation |
GO_0010629 | Biological process | negative regulation of gene expression |
GO_0010628 | Biological process | positive regulation of gene expression |
GO_0006346 | Biological process | DNA methylation-dependent heterochromatin formation |
GO_1903926 | Biological process | cellular response to bisphenol A |
GO_0044027 | Biological process | negative regulation of gene expression via chromosomal CpG island methylation |
GO_0043045 | Biological process | epigenetic programming of gene expression |
GO_0000122 | Biological process | negative regulation of transcription by RNA polymerase II |
GO_0006351 | Biological process | DNA-templated transcription |
GO_0141119 | Biological process | chromosomal DNA methylation maintenance following DNA replication |
GO_0071230 | Biological process | cellular response to amino acid stimulus |
GO_1905931 | Biological process | negative regulation of vascular associated smooth muscle cell differentiation involved in phenotypic switching |
GO_1905460 | Biological process | negative regulation of vascular associated smooth muscle cell apoptotic process |
GO_1904707 | Biological process | positive regulation of vascular associated smooth muscle cell proliferation |
GO_0005657 | Cellular component | replication fork |
GO_0005654 | Cellular component | nucleoplasm |
GO_0001674 | Cellular component | female germ cell nucleus |
GO_0005721 | Cellular component | pericentric heterochromatin |
GO_0005634 | Cellular component | nucleus |
GO_0003677 | Molecular function | DNA binding |
GO_1990841 | Molecular function | promoter-specific chromatin binding |
GO_0003886 | Molecular function | DNA (cytosine-5-)-methyltransferase activity |
GO_0008327 | Molecular function | methyl-CpG binding |
GO_0008270 | Molecular function | zinc ion binding |
GO_0003723 | Molecular function | RNA binding |
GO_0009008 | Molecular function | DNA-methyltransferase activity |
GO_0005515 | Molecular function | protein binding |
Gene name | DNMT1 |
Protein name | DNA (cytosine-5)-methyltransferase (EC 2.1.1.37) DNA (cytosine-5-)-methyltransferase (EC 2.1.1.37) DNA (cytosine-5)-methyltransferase 1 (EC 2.1.1.37) DNA (cytosine-5)-methyltransferase 1 (Dnmt1) (EC 2.1.1.37) (CXXC-type zinc finger protein 9) (DNA methyltransferase HsaI) (DNA MTase HsaI) (M.HsaI) (MCMT) DNA methyltransferase 1 |
Synonyms | DNMT AIM CXXC9 |
Description | FUNCTION: Methylates CpG residues. Preferentially methylates hemimethylated DNA. Associates with DNA replication sites in S phase maintaining the methylation pattern in the newly synthesized strand, that is essential for epigenetic inheritance. Associates with chromatin during G2 and M phases to maintain DNA methylation independently of replication. It is responsible for maintaining methylation patterns established in development. DNA methylation is coordinated with methylation of histones. Mediates transcriptional repression by direct binding to HDAC2. In association with DNMT3B and via the recruitment of CTCFL/BORIS, involved in activation of BAG1 gene expression by modulating dimethylation of promoter histone H3 at H3K4 and H3K9. Probably forms a corepressor complex required for activated KRAS-mediated promoter hypermethylation and transcriptional silencing of tumor suppressor genes (TSGs) or other tumor-related genes in colorectal cancer (CRC) cells . Also required to maintain a transcriptionally repressive state of genes in undifferentiated embryonic stem cells (ESCs) . Associates at promoter regions of tumor suppressor genes (TSGs) leading to their gene silencing . Promotes tumor growth . . |
Accessions | ENST00000588118.5 K7EJL0 ENST00000677013.1 A0A7I2V490 A0A7I2V5F1 ENST00000592342.5 ENST00000586799.1 ENST00000590619.1 K7EMU8 ENST00000588913.5 ENST00000592054.5 ENST00000677946.1 ENST00000677634.1 ENST00000588952.5 ENST00000678804.1 K7ER10 A0A7I2V3F8 P26358 ENST00000676610.1 ENST00000677250.1 ENST00000340748.8 [P26358-1] ENST00000359526.9 [P26358-2] ENST00000586988.5 K7ELB1 ENST00000679103.1 A0A7I2V5F6 ENST00000592705.5 A0A7I2V5D0 I6L9H2 K7ENQ6 ENST00000586800.5 A0A7I2YQA8 A0A7I2YQQ0 K7ENW7 ENST00000677685.1 K7EKC3 K7EIZ6 ENST00000677616.1 A0A7I2V311 ENST00000679313.1 K7EP77 A0A7I2V2G5 K7ERQ1 |