CGGBP1 | OmnibusX

I. Expression across cell types

Name	Number of supported studies	Average coverage
endothelial cell	26 studies	25% ± 10%	Explore
natural killer cell	24 studies	21% ± 4%	Explore
B cell	19 studies	21% ± 6%	Explore
CD8-positive, alpha-beta T cell	19 studies	20% ± 4%	Explore
CD4-positive, alpha-beta T cell	17 studies	19% ± 6%	Explore
fibroblast	17 studies	25% ± 7%	Explore
naive B cell	16 studies	21% ± 4%	Explore
T cell	14 studies	21% ± 5%	Explore
memory B cell	13 studies	19% ± 4%	Explore
pericyte	13 studies	20% ± 5%	Explore
smooth muscle cell	13 studies	19% ± 4%	Explore
CD16-positive, CD56-dim natural killer cell, human	12 studies	20% ± 4%	Explore
gamma-delta T cell	12 studies	22% ± 10%	Explore
regulatory T cell	12 studies	21% ± 5%	Explore
endothelial cell of lymphatic vessel	11 studies	20% ± 4%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	11 studies	18% ± 2%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	11 studies	19% ± 4%	Explore
CD16-negative, CD56-bright natural killer cell, human	10 studies	19% ± 4%	Explore
mature NK T cell	10 studies	19% ± 3%	Explore
mast cell	9 studies	20% ± 5%	Explore
effector memory CD8-positive, alpha-beta T cell	9 studies	21% ± 4%	Explore
CD8-positive, alpha-beta memory T cell	9 studies	23% ± 4%	Explore
astrocyte	9 studies	32% ± 12%	Explore
macrophage	9 studies	23% ± 6%	Explore
oligodendrocyte	9 studies	31% ± 11%	Explore
mucosal invariant T cell	8 studies	19% ± 2%	Explore
adipocyte	8 studies	30% ± 10%	Explore
endothelial cell of vascular tree	8 studies	18% ± 2%	Explore
CD4-positive, alpha-beta memory T cell	7 studies	20% ± 6%	Explore
classical monocyte	7 studies	25% ± 9%	Explore
glutamatergic neuron	7 studies	43% ± 22%	Explore
microglial cell	7 studies	26% ± 8%	Explore
epithelial cell	7 studies	35% ± 16%	Explore
GABAergic neuron	6 studies	41% ± 13%	Explore
capillary endothelial cell	6 studies	18% ± 2%	Explore
myofibroblast cell	6 studies	22% ± 5%	Explore
connective tissue cell	6 studies	23% ± 7%	Explore
basal cell	6 studies	29% ± 11%	Explore
Mueller cell	6 studies	25% ± 4%	Explore
T follicular helper cell	6 studies	21% ± 5%	Explore
oligodendrocyte precursor cell	6 studies	33% ± 11%	Explore
non-classical monocyte	5 studies	27% ± 9%	Explore
endothelial cell of artery	5 studies	16% ± 1%	Explore
pro-B cell	5 studies	27% ± 5%	Explore
amacrine cell	5 studies	27% ± 5%	Explore
retina horizontal cell	5 studies	27% ± 4%	Explore
retinal rod cell	5 studies	22% ± 5%	Explore
dendritic cell	5 studies	28% ± 11%	Explore
innate lymphoid cell	5 studies	21% ± 5%	Explore
monocyte	5 studies	22% ± 7%	Explore
interneuron	5 studies	42% ± 17%	Explore
plasmacytoid dendritic cell	5 studies	21% ± 8%	Explore
hematopoietic precursor cell	4 studies	27% ± 14%	Explore
leukocyte	4 studies	24% ± 5%	Explore
neuron	4 studies	41% ± 13%	Explore
lymphocyte	4 studies	24% ± 8%	Explore
precursor B cell	4 studies	29% ± 5%	Explore
myeloid cell	4 studies	25% ± 6%	Explore
club cell	4 studies	23% ± 3%	Explore
immature B cell	4 studies	23% ± 6%	Explore
cardiac muscle cell	4 studies	24% ± 5%	Explore
effector memory CD4-positive, alpha-beta T cell	4 studies	23% ± 5%	Explore
type I pneumocyte	4 studies	24% ± 4%	Explore
alveolar macrophage	4 studies	23% ± 5%	Explore
effector CD8-positive, alpha-beta T cell	3 studies	18% ± 1%	Explore
conventional dendritic cell	3 studies	33% ± 10%	Explore
exhausted T cell	3 studies	23% ± 7%	Explore
glomerular endothelial cell	3 studies	19% ± 0%	Explore
glial cell	3 studies	26% ± 12%	Explore
retinal bipolar neuron	3 studies	27% ± 3%	Explore
retinal cone cell	3 studies	28% ± 5%	Explore
mononuclear phagocyte	3 studies	22% ± 5%	Explore
ciliated cell	3 studies	37% ± 4%	Explore
glycinergic amacrine cell	3 studies	19% ± 1%	Explore
rod bipolar cell	3 studies	29% ± 5%	Explore
vein endothelial cell	3 studies	17% ± 1%	Explore
muscle cell	3 studies	29% ± 10%	Explore
type II pneumocyte	3 studies	23% ± 5%	Explore
abnormal cell	3 studies	33% ± 8%	Explore
neural progenitor cell	3 studies	33% ± 10%	Explore
goblet cell	3 studies	20% ± 3%	Explore
group 3 innate lymphoid cell	3 studies	32% ± 9%	Explore
Schwann cell	3 studies	25% ± 5%	Explore
double negative thymocyte	3 studies	28% ± 14%	Explore
effector memory CD8-positive, alpha-beta T cell, terminally differentiated	3 studies	18% ± 2%	Explore

II. Expression across tissues

Name	Number of supported studies	Average coverage
brain	12 studies	32% ± 17%	Explore
peripheral blood	11 studies	22% ± 8%	Explore
lung	9 studies	25% ± 8%	Explore
eye	8 studies	24% ± 7%	Explore
bone marrow	4 studies	20% ± 4%	Explore
heart	4 studies	22% ± 5%	Explore
adipose	4 studies	25% ± 7%	Explore
intestine	3 studies	24% ± 9%	Explore
lymph node	3 studies	20% ± 5%	Explore
liver	3 studies	34% ± 13%	Explore

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
bladder	100%	5590.19	21 / 21	100%	41.01	504 / 504
esophagus	100%	5232.54	1445 / 1445	100%	41.37	183 / 183
ovary	100%	7172.47	180 / 180	100%	43.81	430 / 430
breast	100%	6200.94	459 / 459	100%	59.54	1117 / 1118
prostate	100%	5864.38	245 / 245	100%	47.17	501 / 502
lung	100%	6132.96	578 / 578	100%	39.53	1152 / 1155
thymus	100%	7192.54	653 / 653	100%	55.60	602 / 605
kidney	100%	4996.40	89 / 89	99%	41.26	896 / 901
brain	99%	3897.18	2626 / 2642	100%	54.67	705 / 705
uterus	100%	7197.06	170 / 170	99%	42.94	455 / 459
stomach	100%	4328.69	359 / 359	99%	38.30	283 / 286
pancreas	100%	2979.44	327 / 328	99%	40.29	176 / 178
intestine	100%	6434.55	966 / 966	98%	36.01	519 / 527
adrenal gland	100%	4615.29	258 / 258	98%	32.28	226 / 230
skin	100%	5100.29	1807 / 1809	98%	56.88	464 / 472
liver	100%	3296.76	226 / 226	97%	23.68	395 / 406
adipose	100%	6701.48	1204 / 1204	0%	0	0 / 0
blood vessel	100%	6694.24	1335 / 1335	0%	0	0 / 0
lymph node	0%	0	0 / 0	100%	52.54	29 / 29
spleen	100%	7179.07	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	39.43	45 / 45
ureter	0%	0	0 / 0	100%	17.11	1 / 1
muscle	100%	3583.66	802 / 803	0%	0	0 / 0
heart	99%	3559.11	851 / 861	0%	0	0 / 0
peripheral blood	97%	4303.91	899 / 929	0%	0	0 / 0
eye	0%	0	0 / 0	83%	17.67	66 / 80
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0

III. Associated gene sets

GO_0010468	Biological process	regulation of gene expression
GO_0040029	Biological process	epigenetic regulation of gene expression
GO_0000122	Biological process	negative regulation of transcription by RNA polymerase II
GO_0005654	Cellular component	nucleoplasm
GO_0005634	Cellular component	nucleus
GO_0003690	Molecular function	double-stranded DNA binding
GO_0140297	Molecular function	DNA-binding transcription factor binding
GO_0042802	Molecular function	identical protein binding
GO_0005515	Molecular function	protein binding

IV. Literature review

[source]

Gene name	CGGBP1
Protein name	CGG triplet repeat binding protein 1 CGG triplet repeat-binding protein 1 (CGG-binding protein 1) (20 kDa CGG-binding protein) (p20-CGGBP DNA-binding protein)
Synonyms	CGGBP
Description	FUNCTION: Binds to nonmethylated 5'-d(CGG)(n)-3' trinucleotide repeats in the FMR1 promoter. May play a role in regulating FMR1 promoter. .
Accessions	C9JUJ0 ENST00000675130.1 Q9UFW8 ENST00000462901.5 ENST00000309534.10 ENST00000467332.1 ENST00000482016.6 ENST00000398392.2

CGGBP1 report

I. Expression across cell types

II. Expression across tissues

III. Associated gene sets

IV. Literature review