Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 18 studies | 59% ± 20% | |
lung | 6 studies | 41% ± 15% | |
heart | 5 studies | 45% ± 16% | |
eye | 5 studies | 62% ± 16% | |
peripheral blood | 4 studies | 18% ± 2% | |
liver | 4 studies | 38% ± 23% | |
adipose | 4 studies | 46% ± 22% | |
intestine | 3 studies | 17% ± 1% | |
kidney | 3 studies | 51% ± 9% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 3157.44 | 1445 / 1445 | 100% | 22.36 | 183 / 183 |
brain | 100% | 4105.86 | 2641 / 2642 | 100% | 41.20 | 705 / 705 |
thymus | 100% | 4522.40 | 653 / 653 | 100% | 24.87 | 604 / 605 |
stomach | 100% | 2442.94 | 359 / 359 | 100% | 20.15 | 285 / 286 |
breast | 100% | 4109.78 | 459 / 459 | 100% | 23.50 | 1114 / 1118 |
prostate | 100% | 3582.69 | 244 / 245 | 100% | 18.86 | 502 / 502 |
ovary | 100% | 4783.06 | 180 / 180 | 99% | 19.79 | 427 / 430 |
lung | 100% | 3970.26 | 578 / 578 | 99% | 17.28 | 1145 / 1155 |
intestine | 100% | 3275.33 | 966 / 966 | 99% | 17.06 | 520 / 527 |
kidney | 100% | 3230.38 | 89 / 89 | 99% | 22.66 | 889 / 901 |
skin | 100% | 4202.68 | 1808 / 1809 | 99% | 24.50 | 465 / 472 |
bladder | 100% | 3773.19 | 21 / 21 | 98% | 15.33 | 494 / 504 |
uterus | 100% | 4140.00 | 170 / 170 | 98% | 14.23 | 449 / 459 |
pancreas | 99% | 1735.63 | 326 / 328 | 98% | 15.07 | 175 / 178 |
adrenal gland | 100% | 4412.60 | 258 / 258 | 96% | 15.93 | 220 / 230 |
liver | 98% | 1531.57 | 221 / 226 | 91% | 9.57 | 370 / 406 |
adipose | 100% | 4319.21 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 4155.31 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 20.44 | 29 / 29 |
spleen | 100% | 4364.09 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 9.46 | 1 / 1 |
eye | 0% | 0 | 0 / 0 | 99% | 15.94 | 79 / 80 |
heart | 99% | 2309.04 | 850 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 98% | 15.79 | 44 / 45 |
muscle | 97% | 1304.61 | 779 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 90% | 2712.33 | 835 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0090630 | Biological process | activation of GTPase activity |
GO_0016236 | Biological process | macroautophagy |
GO_1902017 | Biological process | regulation of cilium assembly |
GO_0002092 | Biological process | positive regulation of receptor internalization |
GO_0042594 | Biological process | response to starvation |
GO_0042147 | Biological process | retrograde transport, endosome to Golgi |
GO_0015031 | Biological process | protein transport |
GO_0006914 | Biological process | autophagy |
GO_0030122 | Cellular component | AP-2 adaptor complex |
GO_0005794 | Cellular component | Golgi apparatus |
GO_0030904 | Cellular component | retromer complex |
GO_0005829 | Cellular component | cytosol |
GO_1990316 | Cellular component | Atg1/ULK1 kinase complex |
GO_0005776 | Cellular component | autophagosome |
GO_0043231 | Cellular component | intracellular membrane-bounded organelle |
GO_0010008 | Cellular component | endosome membrane |
GO_1905394 | Molecular function | retromer complex binding |
GO_0035612 | Molecular function | AP-2 adaptor complex binding |
GO_0044877 | Molecular function | protein-containing complex binding |
GO_0005096 | Molecular function | GTPase activator activity |
GO_0005515 | Molecular function | protein binding |
Gene name | TBC1D5 |
Protein name | TBC1 domain family member 5 TBC1 domain family, member 5 |
Synonyms | KIAA0210 |
Description | FUNCTION: May act as a GTPase-activating protein (GAP) for Rab family protein(s). May act as a GAP for RAB7A. Can displace RAB7A and retromer CSC subcomplex from the endosomal membrane to the cytosol; at least retromer displacement seems to require its catalytic activity . Required for retrograde transport of cargo proteins from endosomes to the trans-Golgi network (TGN); the function seems to require its catalytic activity. Involved in regulation of autophagy . May act as a molecular switch between endosomal and autophagosomal transport and is involved in reprogramming vesicle trafficking upon autophagy induction. Involved in the trafficking of ATG9A upon activation of autophagy. May regulate the recruitment of ATG9A-AP2-containing vesicles to autophagic membranes . . |
Accessions | F2Z3C3 ENST00000444471.5 Q92609 C9JIU4 ENST00000445294.5 C9JDR8 ENST00000452492.6 C9JNM0 C9JWX0 ENST00000507877.5 ENST00000434420.1 ENST00000430169.5 ENST00000433533.5 ENST00000446818.6 [Q92609-2] B9A6K1 C9J3F6 ENST00000428355.5 C9JW04 ENST00000446863.5 C9JMP7 ENST00000429924.6 C9J397 ENST00000696125.1 [Q92609-2] ENST00000429383.8 [Q92609-1] ENST00000253692.11 [Q92609-1] C9K0P2 C9JED7 F2Z3I5 ENST00000415814.6 ENST00000425944.5 ENST00000414349.5 ENST00000412981.5 |