STX8 report

Query

Invalid input gene. Please select from the suggestions.

I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
natural killer cell	24 studies	24% ± 6%	Explore
endothelial cell	23 studies	31% ± 11%	Explore
macrophage	16 studies	32% ± 12%	Explore
astrocyte	15 studies	34% ± 17%	Explore
fibroblast	15 studies	29% ± 9%	Explore
CD16-positive, CD56-dim natural killer cell, human	12 studies	25% ± 7%	Explore
smooth muscle cell	12 studies	22% ± 4%	Explore
oligodendrocyte precursor cell	11 studies	34% ± 15%	Explore
microglial cell	11 studies	32% ± 10%	Explore
CD16-negative, CD56-bright natural killer cell, human	10 studies	24% ± 5%	Explore
oligodendrocyte	10 studies	32% ± 12%	Explore
GABAergic neuron	9 studies	39% ± 21%	Explore
glutamatergic neuron	9 studies	49% ± 22%	Explore
pericyte	9 studies	22% ± 8%	Explore
adipocyte	9 studies	33% ± 6%	Explore
ciliated cell	9 studies	25% ± 6%	Explore
endothelial cell of lymphatic vessel	9 studies	34% ± 10%	Explore
CD8-positive, alpha-beta T cell	8 studies	20% ± 5%	Explore
mature NK T cell	8 studies	21% ± 7%	Explore
myeloid cell	8 studies	32% ± 9%	Explore
mast cell	8 studies	25% ± 6%	Explore
effector memory CD8-positive, alpha-beta T cell	7 studies	21% ± 4%	Explore
epithelial cell	7 studies	37% ± 14%	Explore
dendritic cell	7 studies	31% ± 9%	Explore
regulatory T cell	7 studies	18% ± 1%	Explore
T cell	7 studies	25% ± 6%	Explore
type I pneumocyte	7 studies	28% ± 8%	Explore
CD4-positive, alpha-beta T cell	6 studies	21% ± 5%	Explore
neuron	6 studies	38% ± 17%	Explore
B cell	6 studies	18% ± 3%	Explore
type II pneumocyte	6 studies	27% ± 6%	Explore
club cell	6 studies	24% ± 8%	Explore
classical monocyte	5 studies	26% ± 8%	Explore
interneuron	5 studies	42% ± 21%	Explore
retinal ganglion cell	5 studies	26% ± 12%	Explore
myofibroblast cell	5 studies	27% ± 7%	Explore
retinal cone cell	5 studies	21% ± 6%	Explore
cardiac muscle cell	5 studies	24% ± 6%	Explore
Mueller cell	5 studies	18% ± 2%	Explore
monocyte	5 studies	35% ± 9%	Explore
basal cell	5 studies	34% ± 14%	Explore
gamma-delta T cell	5 studies	21% ± 8%	Explore
hematopoietic precursor cell	4 studies	25% ± 5%	Explore
non-classical monocyte	4 studies	29% ± 5%	Explore
retinal pigment epithelial cell	4 studies	29% ± 12%	Explore
mesothelial cell	4 studies	28% ± 8%	Explore
mucosal invariant T cell	4 studies	19% ± 5%	Explore
lymphocyte	4 studies	36% ± 8%	Explore
abnormal cell	4 studies	24% ± 8%	Explore
connective tissue cell	4 studies	22% ± 2%	Explore
goblet cell	4 studies	32% ± 19%	Explore
plasmacytoid dendritic cell	4 studies	23% ± 5%	Explore
CD8-positive, alpha-beta memory T cell	4 studies	19% ± 5%	Explore
effector memory CD8-positive, alpha-beta T cell, terminally differentiated	4 studies	20% ± 5%	Explore
conventional dendritic cell	3 studies	37% ± 10%	Explore
glial cell	3 studies	24% ± 5%	Explore
plasma cell	3 studies	26% ± 8%	Explore
amacrine cell	3 studies	22% ± 5%	Explore
retina horizontal cell	3 studies	20% ± 3%	Explore
retinal bipolar neuron	3 studies	17% ± 2%	Explore
mononuclear phagocyte	3 studies	29% ± 1%	Explore
vein endothelial cell	3 studies	31% ± 16%	Explore
retinal rod cell	3 studies	19% ± 3%	Explore
endothelial cell of vascular tree	3 studies	36% ± 12%	Explore
hepatocyte	3 studies	39% ± 13%	Explore
muscle cell	3 studies	39% ± 13%	Explore
leukocyte	3 studies	31% ± 9%	Explore
adventitial cell	3 studies	18% ± 4%	Explore
alveolar macrophage	3 studies	46% ± 8%	Explore
capillary endothelial cell	3 studies	20% ± 4%	Explore
double negative thymocyte	3 studies	23% ± 7%	Explore
renal alpha-intercalated cell	3 studies	22% ± 7%	Explore
mural cell	3 studies	27% ± 12%	Explore
mucus secreting cell	3 studies	27% ± 9%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	14 studies	36% ± 18%	Explore
lung	10 studies	24% ± 7%	Explore
eye	6 studies	24% ± 12%	Explore
peripheral blood	5 studies	22% ± 5%	Explore
liver	5 studies	25% ± 9%	Explore
heart	4 studies	26% ± 4%	Explore
intestine	3 studies	22% ± 7%	Explore
adipose	3 studies	34% ± 6%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
esophagus	100%	1136.80	1445 / 1445	100%	13.21	183 / 183
kidney	100%	980.47	89 / 89	100%	26.55	901 / 901
lung	100%	901.36	578 / 578	100%	19.05	1155 / 1155
prostate	100%	1080.73	245 / 245	100%	25.80	502 / 502
thymus	100%	999.99	653 / 653	100%	35.93	605 / 605
uterus	100%	1059.61	170 / 170	100%	24.92	459 / 459
skin	100%	983.93	1808 / 1809	100%	24.97	472 / 472
brain	100%	879.84	2640 / 2642	100%	36.13	705 / 705
bladder	100%	1180.76	21 / 21	100%	21.65	503 / 504
ovary	100%	960.43	180 / 180	100%	16.84	429 / 430
breast	100%	1159.48	459 / 459	100%	24.12	1115 / 1118
pancreas	100%	561.11	327 / 328	100%	22.71	178 / 178
stomach	100%	847.80	359 / 359	100%	16.57	285 / 286
intestine	100%	1164.72	966 / 966	100%	17.21	525 / 527
adrenal gland	100%	1014.16	258 / 258	100%	24.41	229 / 230
liver	97%	427.74	220 / 226	99%	15.76	403 / 406
adipose	100%	1181.43	1204 / 1204	0%	0	0 / 0
blood vessel	100%	1324.29	1335 / 1335	0%	0	0 / 0
eye	0%	0	0 / 0	100%	27.95	80 / 80
lymph node	0%	0	0 / 0	100%	41.52	29 / 29
spleen	100%	863.96	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	20.20	45 / 45
ureter	0%	0	0 / 0	100%	8.46	1 / 1
muscle	100%	891.84	801 / 803	0%	0	0 / 0
heart	99%	852.28	849 / 861	0%	0	0 / 0
peripheral blood	97%	734.71	904 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0