Name | Number of supported studies | Average coverage | |
---|---|---|---|
peripheral blood | 15 studies | 27% ± 11% | |
lung | 13 studies | 24% ± 6% | |
brain | 8 studies | 33% ± 14% | |
kidney | 7 studies | 17% ± 1% | |
eye | 5 studies | 22% ± 5% | |
bone marrow | 4 studies | 19% ± 3% | |
uterus | 4 studies | 23% ± 11% | |
lymph node | 4 studies | 27% ± 6% | |
intestine | 4 studies | 23% ± 10% | |
placenta | 3 studies | 34% ± 2% | |
adipose | 3 studies | 20% ± 3% | |
liver | 3 studies | 32% ± 13% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 3470.64 | 1445 / 1445 | 100% | 20.32 | 183 / 183 |
ovary | 100% | 4018.13 | 180 / 180 | 100% | 23.23 | 430 / 430 |
lung | 100% | 4125.93 | 578 / 578 | 100% | 24.32 | 1154 / 1155 |
uterus | 100% | 3256.42 | 170 / 170 | 100% | 26.17 | 458 / 459 |
prostate | 100% | 2874.34 | 245 / 245 | 100% | 27.56 | 500 / 502 |
breast | 100% | 3961.65 | 459 / 459 | 100% | 31.97 | 1113 / 1118 |
thymus | 100% | 4759.98 | 653 / 653 | 100% | 43.52 | 602 / 605 |
stomach | 100% | 2812.34 | 359 / 359 | 99% | 21.39 | 284 / 286 |
kidney | 100% | 3620.42 | 89 / 89 | 99% | 34.52 | 890 / 901 |
bladder | 100% | 3743.81 | 21 / 21 | 99% | 22.45 | 497 / 504 |
intestine | 100% | 3741.29 | 966 / 966 | 98% | 20.77 | 519 / 527 |
brain | 98% | 1809.54 | 2598 / 2642 | 100% | 26.17 | 705 / 705 |
pancreas | 99% | 1794.39 | 326 / 328 | 99% | 23.57 | 176 / 178 |
liver | 99% | 1702.10 | 224 / 226 | 99% | 17.66 | 400 / 406 |
adrenal gland | 100% | 3344.61 | 257 / 258 | 96% | 22.07 | 221 / 230 |
skin | 100% | 3589.34 | 1809 / 1809 | 96% | 27.05 | 451 / 472 |
adipose | 100% | 4391.86 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 4529.10 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 37.61 | 29 / 29 |
spleen | 100% | 5986.98 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 25.88 | 45 / 45 |
muscle | 99% | 2013.69 | 798 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 94% | 3121.22 | 870 / 929 | 0% | 0 | 0 / 0 |
heart | 93% | 1659.53 | 803 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 86% | 14.04 | 69 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0072673 | Biological process | lamellipodium morphogenesis |
GO_0034498 | Biological process | early endosome to Golgi transport |
GO_0006886 | Biological process | intracellular protein transport |
GO_0042147 | Biological process | retrograde transport, endosome to Golgi |
GO_0016020 | Cellular component | membrane |
GO_0031901 | Cellular component | early endosome membrane |
GO_0005764 | Cellular component | lysosome |
GO_0032991 | Cellular component | protein-containing complex |
GO_0030904 | Cellular component | retromer complex |
GO_0005829 | Cellular component | cytosol |
GO_0005737 | Cellular component | cytoplasm |
GO_0010008 | Cellular component | endosome membrane |
GO_0030905 | Cellular component | retromer, tubulation complex |
GO_0005768 | Cellular component | endosome |
GO_0030027 | Cellular component | lamellipodium |
GO_0042803 | Molecular function | protein homodimerization activity |
GO_0005158 | Molecular function | insulin receptor binding |
GO_1990459 | Molecular function | transferrin receptor binding |
GO_0045296 | Molecular function | cadherin binding |
GO_0005154 | Molecular function | epidermal growth factor receptor binding |
GO_1990460 | Molecular function | leptin receptor binding |
GO_0042802 | Molecular function | identical protein binding |
GO_0035091 | Molecular function | phosphatidylinositol binding |
GO_0046982 | Molecular function | protein heterodimerization activity |
GO_0005515 | Molecular function | protein binding |
Gene name | SNX2 |
Protein name | Sorting nexin-2 (Transformation-related gene 9 protein) (TRG-9) Sorting nexin-2 Sorting nexin 2 |
Synonyms | TRG9 |
Description | FUNCTION: Involved in several stages of intracellular trafficking. Interacts with membranes containing phosphatidylinositol 3-phosphate (PtdIns(3P)) or phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2) . Acts in part as component of the retromer membrane-deforming SNX-BAR subcomplex . The SNX-BAR retromer mediates retrograde transport of cargo proteins from endosomes to the trans-Golgi network (TGN) and is involved in endosome-to-plasma membrane transport for cargo protein recycling. The SNX-BAR subcomplex functions to deform the donor membrane into a tubular profile called endosome-to-TGN transport carrier (ETC) (Probable). Can sense membrane curvature and has in vitro vesicle-to-membrane remodeling activity . Required for retrograde endosome-to-TGN transport of TGN38 . Promotes KALRN- and RHOG-dependent but retromer-independent membrane remodeling such as lamellipodium formation; the function is dependent on GEF activity of KALRN . . |
Accessions | ENST00000379516.7 [O60749-1] D6RC15 ENST00000512394.5 ENST00000514949.1 [O60749-2] D6RBT1 O60749 ENST00000505934.5 |