SFT2D1 | OmnibusX

I. Expression across cell types

Name	Number of supported studies	Average coverage
macrophage	29 studies	30% ± 12%	Explore
natural killer cell	24 studies	25% ± 6%	Explore
classical monocyte	21 studies	27% ± 9%	Explore
B cell	21 studies	23% ± 9%	Explore
conventional dendritic cell	19 studies	30% ± 13%	Explore
plasmacytoid dendritic cell	18 studies	39% ± 12%	Explore
non-classical monocyte	18 studies	31% ± 10%	Explore
regulatory T cell	16 studies	22% ± 5%	Explore
mast cell	15 studies	27% ± 6%	Explore
CD8-positive, alpha-beta T cell	15 studies	20% ± 4%	Explore
monocyte	14 studies	30% ± 8%	Explore
fibroblast	13 studies	27% ± 11%	Explore
plasma cell	12 studies	34% ± 12%	Explore
dendritic cell	12 studies	31% ± 19%	Explore
epithelial cell	12 studies	34% ± 21%	Explore
CD16-positive, CD56-dim natural killer cell, human	11 studies	23% ± 5%	Explore
naive B cell	11 studies	20% ± 6%	Explore
endothelial cell	11 studies	25% ± 9%	Explore
memory B cell	10 studies	21% ± 5%	Explore
basal cell	10 studies	31% ± 15%	Explore
T cell	9 studies	23% ± 6%	Explore
myeloid cell	9 studies	30% ± 12%	Explore
oligodendrocyte	8 studies	25% ± 9%	Explore
goblet cell	8 studies	26% ± 12%	Explore
CD16-negative, CD56-bright natural killer cell, human	7 studies	22% ± 6%	Explore
mature NK T cell	7 studies	20% ± 2%	Explore
CD4-positive, alpha-beta T cell	7 studies	24% ± 7%	Explore
connective tissue cell	7 studies	24% ± 5%	Explore
ciliated cell	7 studies	35% ± 12%	Explore
type I pneumocyte	7 studies	27% ± 12%	Explore
alveolar macrophage	6 studies	28% ± 11%	Explore
secretory cell	6 studies	30% ± 13%	Explore
kidney loop of Henle epithelial cell	6 studies	23% ± 7%	Explore
neutrophil	6 studies	29% ± 11%	Explore
astrocyte	6 studies	25% ± 10%	Explore
plasmablast	5 studies	44% ± 22%	Explore
mononuclear phagocyte	5 studies	36% ± 16%	Explore
myofibroblast cell	5 studies	18% ± 2%	Explore
smooth muscle cell	5 studies	21% ± 4%	Explore
precursor B cell	5 studies	26% ± 7%	Explore
pericyte	5 studies	26% ± 5%	Explore
type II pneumocyte	5 studies	28% ± 18%	Explore
T follicular helper cell	5 studies	20% ± 3%	Explore
CD4-positive, alpha-beta memory T cell	4 studies	21% ± 4%	Explore
hematopoietic precursor cell	4 studies	30% ± 8%	Explore
immature B cell	4 studies	21% ± 4%	Explore
microglial cell	4 studies	28% ± 7%	Explore
effector CD8-positive, alpha-beta T cell	4 studies	20% ± 3%	Explore
luminal hormone-sensing cell of mammary gland	4 studies	25% ± 6%	Explore
abnormal cell	4 studies	25% ± 7%	Explore
CD8-positive, alpha-beta memory T cell	4 studies	24% ± 7%	Explore
transit amplifying cell	4 studies	17% ± 1%	Explore
effector memory CD8-positive, alpha-beta T cell	3 studies	17% ± 2%	Explore
kidney distal convoluted tubule epithelial cell	3 studies	23% ± 3%	Explore
epithelial cell of proximal tubule	3 studies	19% ± 2%	Explore
renal alpha-intercalated cell	3 studies	29% ± 10%	Explore
leukocyte	3 studies	27% ± 6%	Explore
megakaryocyte	3 studies	32% ± 12%	Explore
club cell	3 studies	33% ± 6%	Explore
enterocyte	3 studies	18% ± 3%	Explore
erythroblast	3 studies	34% ± 20%	Explore
germinal center B cell	3 studies	26% ± 6%	Explore
exhausted T cell	3 studies	23% ± 5%	Explore
intermediate monocyte	3 studies	37% ± 11%	Explore
granulocyte	3 studies	37% ± 14%	Explore
endothelial cell of lymphatic vessel	3 studies	24% ± 5%	Explore
endothelial cell of vascular tree	3 studies	20% ± 2%	Explore
GABAergic neuron	3 studies	22% ± 4%	Explore
glutamatergic neuron	3 studies	31% ± 4%	Explore
oligodendrocyte precursor cell	3 studies	26% ± 4%	Explore
megakaryocyte-erythroid progenitor cell	3 studies	36% ± 15%	Explore
intestinal crypt stem cell	3 studies	25% ± 6%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	3 studies	19% ± 1%	Explore
gamma-delta T cell	3 studies	32% ± 19%	Explore

II. Expression across tissues

Name	Number of supported studies	Average coverage
lung	11 studies	28% ± 11%	Explore
peripheral blood	10 studies	22% ± 5%	Explore
kidney	6 studies	19% ± 3%	Explore
brain	6 studies	29% ± 3%	Explore
liver	5 studies	28% ± 17%	Explore
intestine	5 studies	23% ± 11%	Explore
bone marrow	3 studies	19% ± 2%	Explore
prostate	3 studies	22% ± 5%	Explore
lymph node	3 studies	21% ± 1%	Explore
breast	3 studies	18% ± 2%	Explore

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
esophagus	100%	1630.42	1445 / 1445	100%	41.68	183 / 183
lung	100%	2387.05	578 / 578	100%	45.79	1155 / 1155
pancreas	100%	1622.33	328 / 328	100%	41.86	178 / 178
prostate	100%	2129.02	245 / 245	100%	64.65	502 / 502
brain	100%	2324.88	2641 / 2642	100%	47.09	705 / 705
thymus	100%	2283.40	653 / 653	100%	49.97	604 / 605
intestine	100%	2086.00	966 / 966	100%	51.70	526 / 527
bladder	100%	1768.33	21 / 21	100%	45.60	503 / 504
uterus	100%	1945.71	170 / 170	100%	44.95	458 / 459
ovary	100%	2113.26	180 / 180	100%	39.99	429 / 430
kidney	100%	1991.96	89 / 89	100%	31.98	898 / 901
stomach	100%	1890.99	359 / 359	100%	46.73	285 / 286
breast	100%	2253.86	459 / 459	99%	45.78	1110 / 1118
skin	100%	1871.19	1809 / 1809	99%	36.31	468 / 472
adrenal gland	100%	2304.71	258 / 258	97%	25.06	224 / 230
liver	100%	791.64	226 / 226	72%	11.35	291 / 406
adipose	100%	2144.12	1204 / 1204	0%	0	0 / 0
lymph node	0%	0	0 / 0	100%	77.98	29 / 29
spleen	100%	2730.85	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	33.19	45 / 45
ureter	0%	0	0 / 0	100%	9.96	1 / 1
blood vessel	100%	1612.84	1331 / 1335	0%	0	0 / 0
peripheral blood	99%	2945.01	919 / 929	0%	0	0 / 0
heart	99%	1060.78	849 / 861	0%	0	0 / 0
muscle	97%	719.12	780 / 803	0%	0	0 / 0
eye	0%	0	0 / 0	94%	24.25	75 / 80
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0

III. Associated gene sets

GO_0015031	Biological process	protein transport
GO_0016192	Biological process	vesicle-mediated transport
GO_0043231	Cellular component	intracellular membrane-bounded organelle
GO_0016020	Cellular component	membrane
GO_0012505	Cellular component	endomembrane system
GO_0005737	Cellular component	cytoplasm
GO_0005515	Molecular function	protein binding

IV. Literature review

[source]

Gene name	SFT2D1
Protein name	SFT2D1 protein Vesicle transport protein SFT2A (SFT2 domain-containing protein 1) (pRGR1)
Synonyms	C6orf83
Description	FUNCTION: May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex. .
Accessions	ENST00000361731.4 Q4G178 Q8WV19

SFT2D1 report

I. Expression across cell types

II. Expression across tissues

III. Associated gene sets

IV. Literature review