Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
lung | 93% | 18113.51 | 540 / 578 | 50% | 852.63 | 573 / 1155 |
esophagus | 48% | 138394.35 | 688 / 1445 | 69% | 3052.03 | 127 / 183 |
spleen | 99% | 56824.54 | 239 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 93% | 8711.89 | 42 / 45 |
peripheral blood | 81% | 120184.27 | 752 / 929 | 0% | 0 | 0 / 0 |
uterus | 8% | 3710.99 | 13 / 170 | 67% | 5493.16 | 308 / 459 |
bladder | 19% | 834.90 | 4 / 21 | 44% | 1345.63 | 220 / 504 |
lymph node | 0% | 0 | 0 / 0 | 45% | 184.88 | 13 / 29 |
breast | 14% | 630.68 | 66 / 459 | 22% | 266.07 | 250 / 1118 |
adipose | 35% | 2840.69 | 418 / 1204 | 0% | 0 | 0 / 0 |
skin | 14% | 2662.19 | 259 / 1809 | 20% | 352.82 | 94 / 472 |
kidney | 18% | 893.51 | 16 / 89 | 10% | 32.51 | 92 / 901 |
liver | 21% | 1084.07 | 47 / 226 | 3% | 9.79 | 13 / 406 |
stomach | 14% | 1101.72 | 52 / 359 | 9% | 17.63 | 27 / 286 |
intestine | 10% | 509.09 | 101 / 966 | 12% | 236.16 | 61 / 527 |
pancreas | 2% | 53.84 | 5 / 328 | 19% | 87.12 | 34 / 178 |
ovary | 2% | 93.36 | 4 / 180 | 18% | 36.20 | 77 / 430 |
brain | 5% | 154.15 | 123 / 2642 | 15% | 25.51 | 103 / 705 |
heart | 17% | 797.64 | 145 / 861 | 0% | 0 | 0 / 0 |
thymus | 10% | 376.69 | 63 / 653 | 4% | 31.32 | 27 / 605 |
adrenal gland | 9% | 297.54 | 23 / 258 | 5% | 10.98 | 11 / 230 |
blood vessel | 10% | 530.94 | 135 / 1335 | 0% | 0 | 0 / 0 |
prostate | 5% | 336.43 | 13 / 245 | 1% | 0.98 | 6 / 502 |
muscle | 4% | 166.23 | 29 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0006919 | Biological process | activation of cysteine-type endopeptidase activity involved in apoptotic process |
GO_0002544 | Biological process | chronic inflammatory response |
GO_0050832 | Biological process | defense response to fungus |
GO_0006954 | Biological process | inflammatory response |
GO_0035425 | Biological process | autocrine signaling |
GO_0070488 | Biological process | neutrophil aggregation |
GO_0030307 | Biological process | positive regulation of cell growth |
GO_0032119 | Biological process | sequestering of zinc ion |
GO_0045087 | Biological process | innate immune response |
GO_0051493 | Biological process | regulation of cytoskeleton organization |
GO_2001244 | Biological process | positive regulation of intrinsic apoptotic signaling pathway |
GO_0030593 | Biological process | neutrophil chemotaxis |
GO_0002523 | Biological process | leukocyte migration involved in inflammatory response |
GO_0002790 | Biological process | peptide secretion |
GO_0045471 | Biological process | response to ethanol |
GO_0051092 | Biological process | positive regulation of NF-kappaB transcription factor activity |
GO_0010043 | Biological process | response to zinc ion |
GO_0018119 | Biological process | peptidyl-cysteine S-nitrosylation |
GO_0042742 | Biological process | defense response to bacterium |
GO_0006915 | Biological process | apoptotic process |
GO_0014002 | Biological process | astrocyte development |
GO_0006914 | Biological process | autophagy |
GO_0050729 | Biological process | positive regulation of inflammatory response |
GO_0034121 | Biological process | regulation of toll-like receptor signaling pathway |
GO_0032496 | Biological process | response to lipopolysaccharide |
GO_0002793 | Biological process | positive regulation of peptide secretion |
GO_0005615 | Cellular component | extracellular space |
GO_0005856 | Cellular component | cytoskeleton |
GO_0005576 | Cellular component | extracellular region |
GO_0005886 | Cellular component | plasma membrane |
GO_1990660 | Cellular component | calprotectin complex |
GO_0070062 | Cellular component | extracellular exosome |
GO_0062023 | Cellular component | collagen-containing extracellular matrix |
GO_0034774 | Cellular component | secretory granule lumen |
GO_0045111 | Cellular component | intermediate filament cytoskeleton |
GO_0005829 | Cellular component | cytosol |
GO_0005634 | Cellular component | nucleus |
GO_0035662 | Molecular function | Toll-like receptor 4 binding |
GO_0048306 | Molecular function | calcium-dependent protein binding |
GO_0008270 | Molecular function | zinc ion binding |
GO_0008017 | Molecular function | microtubule binding |
GO_0050544 | Molecular function | arachidonic acid binding |
GO_0050786 | Molecular function | RAGE receptor binding |
GO_0005509 | Molecular function | calcium ion binding |
GO_0005515 | Molecular function | protein binding |
Gene name | S100A8 |
Protein name | Protein S100-A8 (Calgranulin-A) (Calprotectin L1L subunit) (Cystic fibrosis antigen) (CFAG) (Leukocyte L1 complex light chain) (Migration inhibitory factor-related protein 8) (MRP-8) (p8) (S100 calcium-binding protein A8) (Urinary stone protein band A) |
Synonyms | CAGA MRP8 CFAG |
Description | FUNCTION: S100A8 is a calcium- and zinc-binding protein which plays a prominent role in the regulation of inflammatory processes and immune response. It can induce neutrophil chemotaxis and adhesion. Predominantly found as calprotectin (S100A8/A9) which has a wide plethora of intra- and extracellular functions. The intracellular functions include: facilitating leukocyte arachidonic acid trafficking and metabolism, modulation of the tubulin-dependent cytoskeleton during migration of phagocytes and activation of the neutrophilic NADPH-oxidase. Activates NADPH-oxidase by facilitating the enzyme complex assembly at the cell membrane, transferring arachidonic acid, an essential cofactor, to the enzyme complex and S100A8 contributes to the enzyme assembly by directly binding to NCF2/P67PHOX. The extracellular functions involve pro-inflammatory, antimicrobial, oxidant-scavenging and apoptosis-inducing activities. Its pro-inflammatory activity includes recruitment of leukocytes, promotion of cytokine and chemokine production, and regulation of leukocyte adhesion and migration. Acts as an alarmin or a danger associated molecular pattern (DAMP) molecule and stimulates innate immune cells via binding to pattern recognition receptors such as Toll-like receptor 4 (TLR4) and receptor for advanced glycation endproducts (AGER). Binding to TLR4 and AGER activates the MAP-kinase and NF-kappa-B signaling pathways resulting in the amplification of the pro-inflammatory cascade. Has antimicrobial activity towards bacteria and fungi and exerts its antimicrobial activity probably via chelation of Zn(2+) which is essential for microbial growth. Can induce cell death via autophagy and apoptosis and this occurs through the cross-talk of mitochondria and lysosomes via reactive oxygen species (ROS) and the process involves BNIP3. Can regulate neutrophil number and apoptosis by an anti-apoptotic effect; regulates cell survival via ITGAM/ITGB and TLR4 and a signaling mechanism involving MEK-ERK. Its role as an oxidant scavenger has a protective role in preventing exaggerated tissue damage by scavenging oxidants. Can act as a potent amplifier of inflammation in autoimmunity as well as in cancer development and tumor spread. The iNOS-S100A8/A9 transnitrosylase complex directs selective inflammatory stimulus-dependent S-nitrosylation of GAPDH and probably multiple targets such as ANXA5, EZR, MSN and VIM by recognizing a [IL]-x-C-x-x-[DE] motif; S100A8 seems to contribute to S-nitrosylation site selectivity. .; FUNCTION: (Microbial infection) Upon infection by human coronavirus SARS-CoV-2, may induce expansion of aberrant immature neutrophils in a TLR4-dependent manner. . |
Accessions | P05109 ENST00000368732.5 ENST00000368733.4 |