Name | Number of supported studies | Average coverage | |
---|---|---|---|
peripheral blood | 9 studies | 22% ± 7% | |
brain | 9 studies | 29% ± 14% | |
lung | 8 studies | 21% ± 6% | |
eye | 6 studies | 26% ± 10% | |
intestine | 4 studies | 22% ± 7% | |
adipose | 4 studies | 18% ± 2% | |
liver | 4 studies | 31% ± 16% | |
bone marrow | 3 studies | 18% ± 0% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 2944.47 | 1445 / 1445 | 100% | 28.48 | 183 / 183 |
brain | 100% | 2191.23 | 2640 / 2642 | 100% | 37.28 | 705 / 705 |
lung | 100% | 3194.15 | 578 / 578 | 100% | 28.96 | 1152 / 1155 |
breast | 100% | 3434.64 | 459 / 459 | 100% | 39.90 | 1115 / 1118 |
prostate | 100% | 3007.64 | 245 / 245 | 100% | 35.07 | 500 / 502 |
uterus | 100% | 3838.80 | 170 / 170 | 100% | 33.42 | 457 / 459 |
pancreas | 100% | 3591.55 | 328 / 328 | 99% | 23.70 | 177 / 178 |
thymus | 100% | 3303.94 | 653 / 653 | 99% | 33.19 | 600 / 605 |
ovary | 100% | 4195.66 | 180 / 180 | 99% | 20.47 | 426 / 430 |
liver | 100% | 2133.48 | 226 / 226 | 99% | 26.27 | 401 / 406 |
intestine | 100% | 3127.07 | 966 / 966 | 99% | 23.60 | 520 / 527 |
bladder | 100% | 3101.67 | 21 / 21 | 99% | 24.84 | 497 / 504 |
skin | 100% | 3695.86 | 1809 / 1809 | 98% | 37.45 | 464 / 472 |
stomach | 100% | 2631.53 | 359 / 359 | 98% | 23.19 | 279 / 286 |
kidney | 100% | 2675.58 | 89 / 89 | 97% | 27.21 | 877 / 901 |
adrenal gland | 100% | 4226.48 | 258 / 258 | 94% | 21.88 | 217 / 230 |
adipose | 100% | 3192.89 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 3183.73 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 36.41 | 29 / 29 |
spleen | 100% | 3067.95 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 38.92 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 7.57 | 1 / 1 |
muscle | 99% | 1508.54 | 798 / 803 | 0% | 0 | 0 / 0 |
heart | 97% | 1639.63 | 834 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 95% | 24.98 | 76 / 80 |
peripheral blood | 81% | 2255.34 | 751 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0090618 | Biological process | DNA clamp unloading |
GO_0006281 | Biological process | DNA repair |
GO_0000122 | Biological process | negative regulation of transcription by RNA polymerase II |
GO_0045893 | Biological process | positive regulation of DNA-templated transcription |
GO_0007004 | Biological process | telomere maintenance via telomerase |
GO_0006261 | Biological process | DNA-templated DNA replication |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005663 | Cellular component | DNA replication factor C complex |
GO_0031391 | Cellular component | Elg1 RFC-like complex |
GO_0005634 | Cellular component | nucleus |
GO_0003677 | Molecular function | DNA binding |
GO_0008047 | Molecular function | enzyme activator activity |
GO_0003689 | Molecular function | DNA clamp loader activity |
GO_0061860 | Molecular function | DNA clamp unloader activity |
GO_0140297 | Molecular function | DNA-binding transcription factor binding |
GO_0019904 | Molecular function | protein domain specific binding |
GO_0043565 | Molecular function | sequence-specific DNA binding |
GO_0003690 | Molecular function | double-stranded DNA binding |
GO_0005524 | Molecular function | ATP binding |
GO_0005515 | Molecular function | protein binding |
GO_0016887 | Molecular function | ATP hydrolysis activity |
Gene name | RFC1 |
Protein name | Replication factor C subunit 1 (Activator 1 140 kDa subunit) (A1 140 kDa subunit) (Activator 1 large subunit) (Activator 1 subunit 1) (DNA-binding protein PO-GA) (Replication factor C 140 kDa subunit) (RF-C 140 kDa subunit) (RFC140) (Replication factor C large subunit) Replication factor C subunit 1 |
Synonyms | RFC140 |
Description | FUNCTION: The elongation of primed DNA templates by DNA polymerase delta and epsilon requires the action of the accessory proteins PCNA and activator 1. This subunit binds to the primer-template junction. Binds the PO-B transcription element as well as other GA rich DNA sequences. Could play a role in DNA transcription regulation as well as DNA replication and/or repair. Can bind single- or double-stranded DNA. .; FUNCTION: Interacts with C-terminus of PCNA. 5' phosphate residue is required for binding of the N-terminal DNA-binding domain to duplex DNA, suggesting a role in recognition of non-primer template DNA structures during replication and/or repair. . |
Accessions | P35251 D6RAD2 E0CX09 ENST00000514572.1 ENST00000512275.5 ENST00000504554.1 H0Y8U4 H0Y9P8 ENST00000349703.7 [P35251-2] ENST00000381897.5 [P35251-1] ENST00000503784.1 |