Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
thymus | 100% | 1386.02 | 653 / 653 | 11% | 0.38 | 64 / 605 |
kidney | 100% | 979.24 | 89 / 89 | 5% | 0.08 | 45 / 901 |
lung | 100% | 1140.26 | 576 / 578 | 3% | 0.06 | 40 / 1155 |
bladder | 100% | 1717.62 | 21 / 21 | 2% | 0.02 | 8 / 504 |
uterus | 100% | 1353.92 | 170 / 170 | 1% | 0.01 | 5 / 459 |
intestine | 100% | 1635.08 | 966 / 966 | 1% | 0.01 | 5 / 527 |
prostate | 100% | 1557.61 | 245 / 245 | 0% | 0 | 0 / 502 |
spleen | 100% | 2168.47 | 241 / 241 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 1930.03 | 1334 / 1335 | 0% | 0 | 0 / 0 |
breast | 98% | 526.61 | 452 / 459 | 1% | 0.02 | 16 / 1118 |
esophagus | 99% | 1132.34 | 1424 / 1445 | 1% | 0.02 | 2 / 183 |
stomach | 97% | 768.92 | 347 / 359 | 0% | 0.00 | 1 / 286 |
adipose | 96% | 566.66 | 1160 / 1204 | 0% | 0 | 0 / 0 |
ovary | 96% | 577.75 | 173 / 180 | 0% | 0 | 0 / 430 |
peripheral blood | 95% | 1718.97 | 885 / 929 | 0% | 0 | 0 / 0 |
skin | 81% | 373.62 | 1463 / 1809 | 4% | 0.07 | 19 / 472 |
brain | 83% | 439.95 | 2187 / 2642 | 0% | 0 | 0 / 705 |
liver | 82% | 353.41 | 185 / 226 | 0% | 0.00 | 1 / 406 |
adrenal gland | 78% | 297.55 | 202 / 258 | 0% | 0 | 0 / 230 |
pancreas | 53% | 174.55 | 173 / 328 | 2% | 0.03 | 4 / 178 |
lymph node | 0% | 0 | 0 / 0 | 31% | 0.63 | 9 / 29 |
heart | 29% | 79.48 | 246 / 861 | 0% | 0 | 0 / 0 |
muscle | 10% | 28.98 | 84 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 45 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0007265 | Biological process | Ras protein signal transduction |
GO_0006954 | Biological process | inflammatory response |
GO_0019722 | Biological process | calcium-mediated signaling |
GO_0002260 | Biological process | lymphocyte homeostasis |
GO_0050852 | Biological process | T cell receptor signaling pathway |
GO_0045860 | Biological process | positive regulation of protein kinase activity |
GO_0043303 | Biological process | mast cell degranulation |
GO_0006955 | Biological process | immune response |
GO_0002250 | Biological process | adaptive immune response |
GO_0007229 | Biological process | integrin-mediated signaling pathway |
GO_0035556 | Biological process | intracellular signal transduction |
GO_0050863 | Biological process | regulation of T cell activation |
GO_0010467 | Biological process | gene expression |
GO_0042110 | Biological process | T cell activation |
GO_0001772 | Cellular component | immunological synapse |
GO_0005886 | Cellular component | plasma membrane |
GO_0045121 | Cellular component | membrane raft |
GO_0016020 | Cellular component | membrane |
GO_0005794 | Cellular component | Golgi apparatus |
GO_0005911 | Cellular component | cell-cell junction |
GO_0008180 | Cellular component | COP9 signalosome |
GO_0019901 | Molecular function | protein kinase binding |
GO_0030159 | Molecular function | signaling receptor complex adaptor activity |
GO_0005515 | Molecular function | protein binding |
Gene name | LAT |
Protein name | Linker for activation of T-cells family member 1 Linker for activation of T-cells family member 1 (36 kDa phosphotyrosine adapter protein) (pp36) (p36-38) Linker for activation of T cells Linker for activation of T cells (Linker for activation of T-cells family member 1) |
Synonyms | |
Description | FUNCTION: Required for TCR (T-cell antigen receptor)- and pre-TCR-mediated signaling, both in mature T-cells and during their development . Involved in FCGR3 (low affinity immunoglobulin gamma Fc region receptor III)-mediated signaling in natural killer cells and FCER1 (high affinity immunoglobulin epsilon receptor)-mediated signaling in mast cells. Couples activation of these receptors and their associated kinases with distal intracellular events such as mobilization of intracellular calcium stores, PKC activation, MAPK activation or cytoskeletal reorganization through the recruitment of PLCG1, GRB2, GRAP2, and other signaling molecules. . |
Accessions | ENST00000564277.5 [O43561-4] ENST00000570232.2 ENST00000395461.7 [O43561-3] ENST00000566177.5 [O43561-5] ENST00000562701.5 ENST00000395456.7 [O43561-2] ENST00000454369.6 [O43561-4] C7C5T5 C7C5T7 O43561 H3BQD8 C7C5T8 ENST00000360872.9 [O43561-1] |