H1-10 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
endothelial cell	28 studies	37% ± 15%	Explore
pericyte	28 studies	37% ± 16%	Explore
fibroblast	26 studies	34% ± 13%	Explore
natural killer cell	20 studies	29% ± 12%	Explore
smooth muscle cell	19 studies	36% ± 13%	Explore
CD4-positive, alpha-beta T cell	18 studies	30% ± 15%	Explore
plasma cell	17 studies	39% ± 17%	Explore
conventional dendritic cell	17 studies	32% ± 19%	Explore
plasmacytoid dendritic cell	17 studies	35% ± 16%	Explore
CD8-positive, alpha-beta T cell	17 studies	29% ± 13%	Explore
classical monocyte	17 studies	36% ± 20%	Explore
T cell	16 studies	28% ± 8%	Explore
macrophage	15 studies	25% ± 10%	Explore
epithelial cell	15 studies	40% ± 19%	Explore
basal cell	15 studies	38% ± 12%	Explore
B cell	14 studies	33% ± 16%	Explore
gamma-delta T cell	14 studies	31% ± 17%	Explore
endothelial cell of lymphatic vessel	13 studies	35% ± 16%	Explore
non-classical monocyte	13 studies	34% ± 19%	Explore
regulatory T cell	13 studies	28% ± 13%	Explore
monocyte	12 studies	31% ± 12%	Explore
capillary endothelial cell	12 studies	25% ± 11%	Explore
dendritic cell	11 studies	42% ± 24%	Explore
connective tissue cell	11 studies	36% ± 13%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	10 studies	33% ± 15%	Explore
myeloid cell	10 studies	40% ± 25%	Explore
ciliated cell	10 studies	37% ± 14%	Explore
endothelial cell of vascular tree	10 studies	24% ± 10%	Explore
CD16-positive, CD56-dim natural killer cell, human	9 studies	32% ± 13%	Explore
CD8-positive, alpha-beta memory T cell	9 studies	32% ± 18%	Explore
leukocyte	9 studies	30% ± 11%	Explore
CD16-negative, CD56-bright natural killer cell, human	9 studies	31% ± 12%	Explore
endothelial cell of artery	9 studies	26% ± 10%	Explore
vein endothelial cell	9 studies	27% ± 10%	Explore
plasmablast	8 studies	46% ± 18%	Explore
myofibroblast cell	8 studies	39% ± 14%	Explore
secretory cell	8 studies	29% ± 10%	Explore
mucosal invariant T cell	8 studies	28% ± 12%	Explore
mast cell	7 studies	37% ± 17%	Explore
type I pneumocyte	7 studies	33% ± 15%	Explore
CD4-positive, alpha-beta memory T cell	7 studies	28% ± 15%	Explore
effector memory CD8-positive, alpha-beta T cell	7 studies	38% ± 16%	Explore
neuron	7 studies	48% ± 22%	Explore
hematopoietic precursor cell	6 studies	48% ± 26%	Explore
naive B cell	6 studies	31% ± 16%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	6 studies	32% ± 12%	Explore
mature NK T cell	6 studies	27% ± 11%	Explore
goblet cell	6 studies	29% ± 16%	Explore
mesothelial cell	6 studies	54% ± 15%	Explore
IgA plasma cell	6 studies	34% ± 6%	Explore
IgG plasma cell	6 studies	30% ± 6%	Explore
precursor B cell	6 studies	51% ± 17%	Explore
type II pneumocyte	5 studies	33% ± 15%	Explore
mononuclear phagocyte	5 studies	27% ± 16%	Explore
enteroendocrine cell	5 studies	44% ± 14%	Explore
progenitor cell	5 studies	46% ± 17%	Explore
glutamatergic neuron	5 studies	27% ± 12%	Explore
pro-B cell	5 studies	55% ± 21%	Explore
brush cell	5 studies	43% ± 16%	Explore
innate lymphoid cell	5 studies	29% ± 10%	Explore
squamous epithelial cell	4 studies	32% ± 25%	Explore
glomerular endothelial cell	4 studies	29% ± 9%	Explore
abnormal cell	4 studies	39% ± 21%	Explore
lymphocyte	4 studies	33% ± 12%	Explore
immature B cell	4 studies	49% ± 23%	Explore
amacrine cell	4 studies	41% ± 16%	Explore
retina horizontal cell	4 studies	43% ± 15%	Explore
T follicular helper cell	4 studies	39% ± 20%	Explore
effector memory CD4-positive, alpha-beta T cell	4 studies	44% ± 20%	Explore
luminal cell of prostate epithelium	4 studies	26% ± 6%	Explore
hematopoietic stem cell	4 studies	59% ± 14%	Explore
erythrocyte	4 studies	35% ± 12%	Explore
interneuron	4 studies	22% ± 6%	Explore
ionocyte	3 studies	26% ± 11%	Explore
pancreatic A cell	3 studies	52% ± 17%	Explore
effector CD8-positive, alpha-beta T cell	3 studies	30% ± 12%	Explore
neural crest cell	3 studies	61% ± 4%	Explore
retinal bipolar neuron	3 studies	30% ± 8%	Explore
club cell	3 studies	35% ± 6%	Explore
retinal cone cell	3 studies	34% ± 13%	Explore
microglial cell	3 studies	25% ± 9%	Explore
adventitial cell	3 studies	18% ± 2%	Explore
Mueller cell	3 studies	28% ± 9%	Explore
rod bipolar cell	3 studies	32% ± 16%	Explore
CD4-positive helper T cell	3 studies	40% ± 25%	Explore
luminal hormone-sensing cell of mammary gland	3 studies	28% ± 9%	Explore
megakaryocyte-erythroid progenitor cell	3 studies	58% ± 10%	Explore
group 3 innate lymphoid cell	3 studies	51% ± 13%	Explore
memory B cell	3 studies	28% ± 11%	Explore
T-helper 17 cell	3 studies	33% ± 9%	Explore
double negative thymocyte	3 studies	42% ± 16%	Explore
oligodendrocyte precursor cell	3 studies	32% ± 10%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
peripheral blood	13 studies	34% ± 18%	Explore
lung	11 studies	35% ± 11%	Explore
intestine	9 studies	36% ± 16%	Explore
eye	6 studies	30% ± 12%	Explore
brain	6 studies	23% ± 5%	Explore
liver	5 studies	31% ± 15%	Explore
kidney	4 studies	20% ± 3%	Explore
uterus	4 studies	40% ± 16%	Explore
lymph node	4 studies	41% ± 19%	Explore
pancreas	3 studies	44% ± 13%	Explore
placenta	3 studies	28% ± 2%	Explore
breast	3 studies	35% ± 6%	Explore
prostate	3 studies	34% ± 9%	Explore
bone marrow	3 studies	38% ± 20%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
ovary	100%	7294.09	180 / 180	100%	311.07	430 / 430
uterus	100%	6137.30	170 / 170	100%	273.95	458 / 459
esophagus	100%	4859.49	1445 / 1445	99%	175.16	182 / 183
prostate	100%	6079.83	245 / 245	99%	234.70	498 / 502
thymus	100%	4690.60	650 / 653	99%	221.51	600 / 605
breast	100%	6880.49	459 / 459	98%	164.96	1093 / 1118
bladder	100%	5857.62	21 / 21	98%	189.68	492 / 504
intestine	100%	5286.47	966 / 966	98%	143.08	514 / 527
stomach	99%	4022.11	357 / 359	98%	130.81	280 / 286
lung	99%	5333.71	573 / 578	98%	166.91	1133 / 1155
skin	100%	7542.70	1805 / 1809	97%	121.71	458 / 472
brain	97%	3391.18	2551 / 2642	100%	171.41	703 / 705
adrenal gland	99%	2323.24	255 / 258	97%	147.01	224 / 230
pancreas	97%	2421.12	317 / 328	96%	148.25	171 / 178
liver	98%	2407.01	222 / 226	94%	103.76	381 / 406
kidney	98%	3066.56	87 / 89	91%	81.67	818 / 901
lymph node	0%	0	0 / 0	100%	157.38	29 / 29
spleen	100%	5751.66	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	278.67	45 / 45
ureter	0%	0	0 / 0	100%	107.97	1 / 1
adipose	100%	5108.52	1200 / 1204	0%	0	0 / 0
blood vessel	99%	4747.75	1327 / 1335	0%	0	0 / 0
heart	95%	2162.52	820 / 861	0%	0	0 / 0
peripheral blood	95%	5127.93	881 / 929	0%	0	0 / 0
muscle	93%	2793.70	748 / 803	0%	0	0 / 0
eye	0%	0	0 / 0	90%	85.40	72 / 80
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0