ERBIN report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
endothelial cell	30 studies	35% ± 13%	Explore
natural killer cell	22 studies	25% ± 10%	Explore
astrocyte	18 studies	60% ± 17%	Explore
macrophage	18 studies	34% ± 18%	Explore
oligodendrocyte	16 studies	72% ± 22%	Explore
fibroblast	14 studies	31% ± 11%	Explore
B cell	12 studies	28% ± 10%	Explore
ciliated cell	11 studies	31% ± 13%	Explore
classical monocyte	11 studies	26% ± 10%	Explore
GABAergic neuron	11 studies	45% ± 23%	Explore
oligodendrocyte precursor cell	11 studies	37% ± 16%	Explore
CD16-positive, CD56-dim natural killer cell, human	11 studies	24% ± 8%	Explore
CD8-positive, alpha-beta T cell	11 studies	24% ± 6%	Explore
microglial cell	11 studies	49% ± 13%	Explore
T cell	10 studies	29% ± 12%	Explore
CD16-negative, CD56-bright natural killer cell, human	10 studies	22% ± 7%	Explore
pericyte	10 studies	27% ± 8%	Explore
smooth muscle cell	10 studies	30% ± 10%	Explore
epithelial cell	10 studies	41% ± 25%	Explore
monocyte	9 studies	33% ± 14%	Explore
adipocyte	9 studies	27% ± 9%	Explore
endothelial cell of lymphatic vessel	8 studies	34% ± 14%	Explore
non-classical monocyte	8 studies	27% ± 12%	Explore
CD4-positive, alpha-beta T cell	8 studies	25% ± 4%	Explore
glutamatergic neuron	8 studies	44% ± 25%	Explore
myeloid cell	8 studies	37% ± 10%	Explore
basal cell	8 studies	40% ± 17%	Explore
mast cell	8 studies	29% ± 15%	Explore
regulatory T cell	8 studies	24% ± 8%	Explore
neuron	7 studies	41% ± 23%	Explore
dendritic cell	7 studies	39% ± 10%	Explore
type I pneumocyte	6 studies	34% ± 14%	Explore
Mueller cell	6 studies	55% ± 23%	Explore
leukocyte	5 studies	32% ± 17%	Explore
naive B cell	5 studies	18% ± 2%	Explore
effector memory CD8-positive, alpha-beta T cell	5 studies	27% ± 4%	Explore
club cell	5 studies	37% ± 13%	Explore
retinal cone cell	5 studies	24% ± 8%	Explore
type II pneumocyte	5 studies	32% ± 13%	Explore
CD8-positive, alpha-beta memory T cell	5 studies	21% ± 3%	Explore
gamma-delta T cell	5 studies	23% ± 11%	Explore
interneuron	5 studies	54% ± 18%	Explore
squamous epithelial cell	4 studies	41% ± 20%	Explore
neutrophil	4 studies	20% ± 3%	Explore
plasma cell	4 studies	38% ± 9%	Explore
cardiac muscle cell	4 studies	32% ± 2%	Explore
endothelial cell of artery	4 studies	22% ± 3%	Explore
mesothelial cell	4 studies	35% ± 10%	Explore
vein endothelial cell	4 studies	32% ± 13%	Explore
lymphocyte	4 studies	39% ± 7%	Explore
amacrine cell	4 studies	37% ± 21%	Explore
capillary endothelial cell	4 studies	36% ± 12%	Explore
endothelial cell of vascular tree	4 studies	31% ± 15%	Explore
goblet cell	4 studies	33% ± 28%	Explore
CD4-positive, alpha-beta memory T cell	3 studies	23% ± 4%	Explore
conventional dendritic cell	3 studies	29% ± 15%	Explore
mature NK T cell	3 studies	32% ± 12%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	3 studies	29% ± 3%	Explore
abnormal cell	3 studies	36% ± 19%	Explore
memory B cell	3 studies	17% ± 2%	Explore
megakaryocyte	3 studies	32% ± 12%	Explore
glial cell	3 studies	43% ± 15%	Explore
mononuclear phagocyte	3 studies	34% ± 9%	Explore
mucosal invariant T cell	3 studies	23% ± 6%	Explore
glycinergic amacrine cell	3 studies	39% ± 8%	Explore
respiratory goblet cell	3 studies	47% ± 15%	Explore
secretory cell	3 studies	24% ± 7%	Explore
neural progenitor cell	3 studies	51% ± 21%	Explore
connective tissue cell	3 studies	31% ± 11%	Explore
ependymal cell	3 studies	63% ± 13%	Explore
enterocyte	3 studies	22% ± 4%	Explore
myofibroblast cell	3 studies	33% ± 15%	Explore
alveolar macrophage	3 studies	46% ± 13%	Explore
Schwann cell	3 studies	44% ± 21%	Explore
kidney distal convoluted tubule epithelial cell	3 studies	28% ± 7%	Explore
kidney loop of Henle epithelial cell	3 studies	24% ± 7%	Explore
renal principal cell	3 studies	26% ± 7%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	16 studies	46% ± 21%	Explore
lung	9 studies	30% ± 11%	Explore
peripheral blood	5 studies	28% ± 7%	Explore
heart	4 studies	28% ± 4%	Explore
kidney	4 studies	29% ± 9%	Explore
eye	3 studies	44% ± 24%	Explore
intestine	3 studies	21% ± 5%	Explore
adipose	3 studies	36% ± 7%	Explore
liver	3 studies	35% ± 20%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
esophagus	100%	4003.47	1445 / 1445	100%	35.83	183 / 183
prostate	100%	4614.91	245 / 245	99%	35.16	499 / 502
thymus	100%	4969.82	653 / 653	99%	37.85	601 / 605
breast	100%	4585.63	459 / 459	99%	44.62	1110 / 1118
lung	100%	4432.08	577 / 578	99%	30.27	1148 / 1155
ovary	100%	4041.24	180 / 180	99%	18.55	426 / 430
kidney	100%	3551.61	89 / 89	99%	33.28	892 / 901
uterus	100%	4461.30	170 / 170	98%	29.48	449 / 459
bladder	100%	4693.10	21 / 21	97%	24.84	490 / 504
brain	97%	7230.65	2575 / 2642	100%	56.19	703 / 705
pancreas	98%	2339.49	323 / 328	98%	30.26	175 / 178
intestine	100%	5849.32	966 / 966	96%	23.55	506 / 527
stomach	100%	3827.24	359 / 359	96%	26.14	274 / 286
liver	100%	2990.23	226 / 226	95%	19.64	385 / 406
skin	100%	7158.12	1808 / 1809	95%	34.74	447 / 472
adrenal gland	100%	3529.03	258 / 258	90%	14.32	206 / 230
lymph node	0%	0	0 / 0	100%	26.70	29 / 29
spleen	100%	4931.01	241 / 241	0%	0	0 / 0
ureter	0%	0	0 / 0	100%	12.56	1 / 1
blood vessel	100%	4100.33	1334 / 1335	0%	0	0 / 0
adipose	100%	4276.88	1203 / 1204	0%	0	0 / 0
muscle	100%	2972.00	799 / 803	0%	0	0 / 0
tonsil	0%	0	0 / 0	98%	32.16	44 / 45
heart	93%	2170.70	798 / 861	0%	0	0 / 0
peripheral blood	86%	3691.08	800 / 929	0%	0	0 / 0
eye	0%	0	0 / 0	84%	25.31	67 / 80
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0