Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 45 studies | 44% ± 19% | |
smooth muscle cell | 30 studies | 47% ± 20% | |
endothelial cell of lymphatic vessel | 29 studies | 70% ± 23% | |
fibroblast | 29 studies | 38% ± 20% | |
pericyte | 28 studies | 50% ± 26% | |
mast cell | 26 studies | 59% ± 23% | |
macrophage | 25 studies | 40% ± 20% | |
basal cell | 25 studies | 74% ± 23% | |
epithelial cell | 25 studies | 66% ± 23% | |
ciliated cell | 18 studies | 71% ± 17% | |
astrocyte | 17 studies | 34% ± 19% | |
endothelial cell of artery | 15 studies | 57% ± 20% | |
capillary endothelial cell | 15 studies | 46% ± 17% | |
endothelial cell of vascular tree | 15 studies | 56% ± 24% | |
oligodendrocyte | 14 studies | 40% ± 16% | |
type I pneumocyte | 12 studies | 68% ± 26% | |
club cell | 12 studies | 68% ± 27% | |
secretory cell | 12 studies | 84% ± 12% | |
vein endothelial cell | 12 studies | 43% ± 13% | |
type II pneumocyte | 11 studies | 63% ± 26% | |
connective tissue cell | 11 studies | 35% ± 16% | |
myofibroblast cell | 11 studies | 59% ± 22% | |
mesothelial cell | 11 studies | 42% ± 15% | |
conventional dendritic cell | 10 studies | 35% ± 8% | |
goblet cell | 10 studies | 66% ± 17% | |
platelet | 9 studies | 47% ± 17% | |
myeloid cell | 9 studies | 36% ± 14% | |
alveolar macrophage | 8 studies | 58% ± 26% | |
respiratory goblet cell | 8 studies | 69% ± 24% | |
brush cell | 8 studies | 55% ± 18% | |
oligodendrocyte precursor cell | 8 studies | 29% ± 11% | |
ionocyte | 7 studies | 88% ± 16% | |
plasma cell | 7 studies | 29% ± 13% | |
classical monocyte | 6 studies | 23% ± 9% | |
kidney loop of Henle epithelial cell | 6 studies | 53% ± 26% | |
megakaryocyte | 6 studies | 58% ± 29% | |
abnormal cell | 6 studies | 52% ± 17% | |
intestinal crypt stem cell | 6 studies | 57% ± 27% | |
transit amplifying cell | 6 studies | 64% ± 25% | |
precursor B cell | 6 studies | 54% ± 8% | |
enterocyte | 6 studies | 41% ± 17% | |
glial cell | 6 studies | 68% ± 19% | |
mucus secreting cell | 6 studies | 46% ± 25% | |
duct epithelial cell | 5 studies | 74% ± 29% | |
renal alpha-intercalated cell | 5 studies | 90% ± 6% | |
kidney distal convoluted tubule epithelial cell | 5 studies | 48% ± 24% | |
pro-B cell | 5 studies | 50% ± 10% | |
progenitor cell | 5 studies | 62% ± 24% | |
Schwann cell | 5 studies | 67% ± 19% | |
neuron | 5 studies | 58% ± 14% | |
Mueller cell | 5 studies | 52% ± 23% | |
keratinocyte | 5 studies | 67% ± 24% | |
dendritic cell | 4 studies | 30% ± 16% | |
deuterosomal cell | 4 studies | 35% ± 9% | |
squamous epithelial cell | 4 studies | 59% ± 22% | |
mononuclear phagocyte | 4 studies | 33% ± 16% | |
T cell | 4 studies | 40% ± 19% | |
glomerular endothelial cell | 4 studies | 82% ± 7% | |
renal beta-intercalated cell | 4 studies | 68% ± 31% | |
immature B cell | 4 studies | 35% ± 9% | |
monocyte | 4 studies | 39% ± 16% | |
adventitial cell | 4 studies | 33% ± 16% | |
luminal hormone-sensing cell of mammary gland | 4 studies | 83% ± 6% | |
luminal cell of prostate epithelium | 4 studies | 75% ± 33% | |
leukocyte | 4 studies | 33% ± 14% | |
melanocyte | 4 studies | 84% ± 12% | |
hillock cell | 3 studies | 71% ± 30% | |
kidney connecting tubule epithelial cell | 3 studies | 79% ± 8% | |
podocyte | 3 studies | 34% ± 13% | |
B cell | 3 studies | 28% ± 9% | |
epithelial cell of proximal tubule | 3 studies | 21% ± 2% | |
neural crest cell | 3 studies | 24% ± 3% | |
microglial cell | 3 studies | 44% ± 19% | |
renal principal cell | 3 studies | 89% ± 4% | |
extravillous trophoblast | 3 studies | 43% ± 14% | |
neuroendocrine cell | 3 studies | 81% ± 11% | |
serous secreting cell | 3 studies | 60% ± 17% | |
endocardial cell | 3 studies | 60% ± 15% | |
monocyte-derived dendritic cell | 3 studies | 29% ± 9% | |
muscle cell | 3 studies | 39% ± 17% | |
enteroendocrine cell | 3 studies | 31% ± 8% | |
progenitor cell of mammary luminal epithelium | 3 studies | 62% ± 21% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
lung | 18 studies | 45% ± 22% | |
intestine | 11 studies | 31% ± 20% | |
brain | 7 studies | 28% ± 11% | |
kidney | 6 studies | 36% ± 16% | |
uterus | 6 studies | 40% ± 19% | |
eye | 5 studies | 24% ± 6% | |
prostate | 5 studies | 59% ± 28% | |
esophagus | 4 studies | 56% ± 20% | |
breast | 4 studies | 45% ± 11% | |
pancreas | 3 studies | 20% ± 3% | |
placenta | 3 studies | 21% ± 2% | |
skin | 3 studies | 68% ± 15% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 14619.73 | 245 / 245 | 99% | 330.93 | 498 / 502 |
bladder | 100% | 14435.86 | 21 / 21 | 98% | 304.54 | 492 / 504 |
intestine | 100% | 18807.02 | 962 / 966 | 97% | 277.13 | 512 / 527 |
lung | 99% | 14358.22 | 573 / 578 | 97% | 371.79 | 1115 / 1155 |
thymus | 100% | 17327.21 | 653 / 653 | 95% | 269.48 | 572 / 605 |
breast | 96% | 9866.22 | 440 / 459 | 99% | 266.44 | 1103 / 1118 |
esophagus | 100% | 25822.67 | 1445 / 1445 | 94% | 261.42 | 172 / 183 |
uterus | 99% | 12113.88 | 169 / 170 | 93% | 302.24 | 427 / 459 |
kidney | 100% | 11587.64 | 89 / 89 | 83% | 137.59 | 747 / 901 |
stomach | 79% | 6699.22 | 283 / 359 | 92% | 208.84 | 262 / 286 |
adrenal gland | 100% | 13436.08 | 258 / 258 | 65% | 106.42 | 149 / 230 |
brain | 59% | 3848.83 | 1554 / 2642 | 92% | 136.19 | 650 / 705 |
skin | 79% | 14187.96 | 1425 / 1809 | 68% | 90.26 | 319 / 472 |
ovary | 45% | 2276.07 | 81 / 180 | 100% | 334.77 | 428 / 430 |
pancreas | 42% | 1636.38 | 139 / 328 | 93% | 152.13 | 165 / 178 |
ureter | 0% | 0 | 0 / 0 | 100% | 269.88 | 1 / 1 |
blood vessel | 100% | 19024.32 | 1334 / 1335 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 98% | 428.63 | 44 / 45 |
adipose | 95% | 8043.66 | 1139 / 1204 | 0% | 0 | 0 / 0 |
heart | 88% | 6561.26 | 761 / 861 | 0% | 0 | 0 / 0 |
spleen | 67% | 2730.16 | 161 / 241 | 0% | 0 | 0 / 0 |
liver | 20% | 781.62 | 46 / 226 | 15% | 11.32 | 60 / 406 |
muscle | 27% | 987.93 | 220 / 803 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 10% | 8.35 | 3 / 29 |
peripheral blood | 5% | 166.63 | 44 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 1% | 0.85 | 1 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0008285 | Biological process | negative regulation of cell population proliferation |
GO_0031623 | Biological process | receptor internalization |
GO_0014905 | Biological process | myoblast fusion involved in skeletal muscle regeneration |
GO_0008283 | Biological process | cell population proliferation |
GO_0035036 | Biological process | sperm-egg recognition |
GO_0007155 | Biological process | cell adhesion |
GO_0090331 | Biological process | negative regulation of platelet aggregation |
GO_0030168 | Biological process | platelet activation |
GO_0071404 | Biological process | cellular response to low-density lipoprotein particle stimulus |
GO_0008347 | Biological process | glial cell migration |
GO_1905521 | Biological process | regulation of macrophage migration |
GO_0030913 | Biological process | paranodal junction assembly |
GO_0007342 | Biological process | fusion of sperm to egg plasma membrane involved in single fertilization |
GO_0005615 | Cellular component | extracellular space |
GO_0009897 | Cellular component | external side of plasma membrane |
GO_0005886 | Cellular component | plasma membrane |
GO_0016020 | Cellular component | membrane |
GO_0030666 | Cellular component | endocytic vesicle membrane |
GO_0070062 | Cellular component | extracellular exosome |
GO_0032991 | Cellular component | protein-containing complex |
GO_1903561 | Cellular component | extracellular vesicle |
GO_0030669 | Cellular component | clathrin-coated endocytic vesicle membrane |
GO_0005925 | Cellular component | focal adhesion |
GO_0031092 | Cellular component | platelet alpha granule membrane |
GO_0005178 | Molecular function | integrin binding |
GO_0005515 | Molecular function | protein binding |
Gene name | CD9 |
Protein name | Tetraspanin CD9 molecule CD9 antigen (5H9 antigen) (Cell growth-inhibiting gene 2 protein) (Leukocyte antigen MIC3) (Motility-related protein) (MRP-1) (Tetraspanin-29) (Tspan-29) (p24) (CD antigen CD9) |
Synonyms | TSPAN29 MIC3 GIG2 |
Description | FUNCTION: Integral membrane protein associated with integrins, which regulates different processes, such as sperm-egg fusion, platelet activation and aggregation, and cell adhesion . Present at the cell surface of oocytes and plays a key role in sperm-egg fusion, possibly by organizing multiprotein complexes and the morphology of the membrane required for the fusion (By similarity). In myoblasts, associates with CD81 and PTGFRN and inhibits myotube fusion during muscle regeneration (By similarity). In macrophages, associates with CD81 and beta-1 and beta-2 integrins, and prevents macrophage fusion into multinucleated giant cells specialized in ingesting complement-opsonized large particles . Also prevents the fusion between mononuclear cell progenitors into osteoclasts in charge of bone resorption (By similarity). Acts as a receptor for PSG17 (By similarity). Involved in platelet activation and aggregation . Regulates paranodal junction formation (By similarity). Involved in cell adhesion, cell motility and tumor metastasis . . |
Accessions | A0A087WU13 ENST00000536586.7 F5GXT1 G8JLH6 ENST00000610354.5 ENST00000676764.1 ENST00000679331.1 ENST00000677572.1 ENST00000382515.7 P21926 A0A7I2V3T7 ENST00000382518.6 ENST00000538834.6 ENST00000645565.1 ENST00000642746.1 ENST00000009180.10 ENST00000646407.1 A6NNI4 A0A7I2V3T0 ENST00000382519.9 A0A2R8Y478 |