Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 17 studies | 39% ± 19% | |
lung | 9 studies | 27% ± 7% | |
eye | 8 studies | 31% ± 11% | |
intestine | 6 studies | 20% ± 7% | |
heart | 5 studies | 20% ± 5% | |
adipose | 4 studies | 26% ± 7% | |
peripheral blood | 3 studies | 28% ± 8% | |
kidney | 3 studies | 24% ± 3% | |
liver | 3 studies | 41% ± 18% | |
bone marrow | 3 studies | 27% ± 8% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 7371.93 | 459 / 459 | 100% | 28.80 | 1118 / 1118 |
lung | 100% | 7984.85 | 578 / 578 | 100% | 27.94 | 1155 / 1155 |
ovary | 100% | 11651.42 | 180 / 180 | 100% | 25.11 | 430 / 430 |
uterus | 100% | 10807.77 | 170 / 170 | 100% | 31.05 | 459 / 459 |
esophagus | 100% | 7194.67 | 1444 / 1445 | 100% | 35.75 | 183 / 183 |
prostate | 100% | 6901.65 | 245 / 245 | 100% | 17.04 | 501 / 502 |
brain | 100% | 6744.16 | 2634 / 2642 | 100% | 22.60 | 705 / 705 |
thymus | 100% | 8232.23 | 653 / 653 | 100% | 19.32 | 602 / 605 |
bladder | 100% | 8388.00 | 21 / 21 | 99% | 23.99 | 501 / 504 |
intestine | 100% | 7802.70 | 966 / 966 | 98% | 22.74 | 519 / 527 |
stomach | 100% | 5416.03 | 359 / 359 | 98% | 23.10 | 281 / 286 |
pancreas | 99% | 5141.52 | 325 / 328 | 99% | 19.10 | 176 / 178 |
kidney | 100% | 5809.46 | 89 / 89 | 97% | 15.35 | 874 / 901 |
adrenal gland | 100% | 6956.28 | 258 / 258 | 97% | 12.92 | 222 / 230 |
skin | 100% | 10322.43 | 1809 / 1809 | 96% | 23.22 | 451 / 472 |
liver | 99% | 4337.93 | 224 / 226 | 96% | 11.13 | 390 / 406 |
lymph node | 0% | 0 | 0 / 0 | 100% | 25.61 | 29 / 29 |
spleen | 100% | 8682.39 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 27.32 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 7.63 | 1 / 1 |
adipose | 100% | 7430.03 | 1203 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 7639.47 | 1332 / 1335 | 0% | 0 | 0 / 0 |
muscle | 99% | 5758.92 | 798 / 803 | 0% | 0 | 0 / 0 |
heart | 96% | 4634.74 | 829 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 79% | 6713.99 | 734 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 79% | 9.96 | 63 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0032434 | Biological process | regulation of proteasomal ubiquitin-dependent protein catabolic process |
GO_0006611 | Biological process | protein export from nucleus |
GO_0000054 | Biological process | ribosomal subunit export from nucleus |
GO_0042254 | Biological process | ribosome biogenesis |
GO_0006406 | Biological process | mRNA export from nucleus |
GO_0010824 | Biological process | regulation of centrosome duplication |
GO_0034504 | Biological process | protein localization to nucleus |
GO_0000056 | Biological process | ribosomal small subunit export from nucleus |
GO_0006913 | Biological process | nucleocytoplasmic transport |
GO_0046825 | Biological process | regulation of protein export from nucleus |
GO_0000055 | Biological process | ribosomal large subunit export from nucleus |
GO_0005730 | Cellular component | nucleolus |
GO_0016020 | Cellular component | membrane |
GO_0005642 | Cellular component | annulate lamellae |
GO_0000776 | Cellular component | kinetochore |
GO_0032991 | Cellular component | protein-containing complex |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005635 | Cellular component | nuclear envelope |
GO_0005829 | Cellular component | cytosol |
GO_0005737 | Cellular component | cytoplasm |
GO_0015030 | Cellular component | Cajal body |
GO_0043231 | Cellular component | intracellular membrane-bounded organelle |
GO_1990904 | Cellular component | ribonucleoprotein complex |
GO_0031965 | Cellular component | nuclear membrane |
GO_0005634 | Cellular component | nucleus |
GO_0031267 | Molecular function | small GTPase binding |
GO_0003723 | Molecular function | RNA binding |
GO_0005049 | Molecular function | nuclear export signal receptor activity |
GO_0005515 | Molecular function | protein binding |
Gene name | XPO1 |
Protein name | Exportin 1 Exportin-1 (Exp1) (Chromosome region maintenance 1 protein homolog) |
Synonyms | CRM1 |
Description | FUNCTION: Mediates the nuclear export of cellular proteins (cargos) bearing a leucine-rich nuclear export signal (NES) and of RNAs. In the nucleus, in association with RANBP3, binds cooperatively to the NES on its target protein and to the GTPase RAN in its active GTP-bound form (Ran-GTP). Docking of this complex to the nuclear pore complex (NPC) is mediated through binding to nucleoporins. Upon transit of a nuclear export complex into the cytoplasm, disassembling of the complex and hydrolysis of Ran-GTP to Ran-GDP (induced by RANBP1 and RANGAP1, respectively) cause release of the cargo from the export receptor. The directionality of nuclear export is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. Involved in U3 snoRNA transport from Cajal bodies to nucleoli. Binds to late precursor U3 snoRNA bearing a TMG cap. .; FUNCTION: (Microbial infection) Mediates the export of unspliced or incompletely spliced RNAs out of the nucleus from different viruses including HIV-1, HTLV-1 and influenza A. Interacts with, and mediates the nuclear export of HIV-1 Rev and HTLV-1 Rex proteins. Involved in HTLV-1 Rex multimerization. . |
Accessions | A0A7I2YQV4 ENST00000401558.7 ENST00000677803.1 ENST00000404992.6 ENST00000676999.1 ENST00000679035.1 ENST00000677814.1 A0A7I2V3W6 O14980 ENST00000677289.1 A0A7I2V2S3 ENST00000677813.1 ENST00000678263.1 ENST00000677150.1 ENST00000678182.1 ENST00000677476.1 ENST00000680228.1 ENST00000677850.1 ENST00000451765.6 A0A7I2V396 ENST00000676667.1 A0A7I2YQX3 A0A7I2V3P3 F8WF71 ENST00000677239.1 A0A7I2V3J1 ENST00000676789.1 A0A7I2V461 ENST00000676783.1 ENST00000678081.1 ENST00000677556.1 ENST00000678877.1 ENST00000443240.5 A0A7I2V2C5 A0A7I2V488 ENST00000678741.1 A0A7I2YQP1 A0A7I2V3N0 C9IYM2 ENST00000677928.1 A0A7I2V6B9 A0A7I2V2Y6 ENST00000676771.1 A0A7I2V4A3 ENST00000449444.5 ENST00000406957.5 ENST00000677933.1 ENST00000678790.1 ENST00000677417.1 ENST00000678172.1 ENST00000678360.1 A0A7P0Z4B7 A0A7I2V531 C9JKM9 ENST00000676889.1 ENST00000677422.1 ENST00000428210.5 ENST00000676553.1 A0A7I2V2H0 C9J673 |