Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
lung | 100% | 641.12 | 578 / 578 | 84% | 3.33 | 970 / 1155 |
kidney | 83% | 280.26 | 74 / 89 | 75% | 2.69 | 672 / 901 |
breast | 69% | 103.95 | 316 / 459 | 83% | 3.52 | 929 / 1118 |
stomach | 90% | 195.63 | 323 / 359 | 60% | 1.76 | 173 / 286 |
uterus | 73% | 92.84 | 124 / 170 | 67% | 2.27 | 306 / 459 |
prostate | 90% | 199.38 | 220 / 245 | 47% | 1.07 | 234 / 502 |
thymus | 84% | 255.25 | 548 / 653 | 51% | 5.90 | 308 / 605 |
bladder | 76% | 215.10 | 16 / 21 | 57% | 1.75 | 288 / 504 |
intestine | 73% | 644.76 | 708 / 966 | 55% | 1.55 | 290 / 527 |
esophagus | 69% | 113.15 | 994 / 1445 | 59% | 1.68 | 108 / 183 |
liver | 78% | 101.42 | 176 / 226 | 27% | 0.81 | 108 / 406 |
lymph node | 0% | 0 | 0 / 0 | 100% | 25.77 | 29 / 29 |
peripheral blood | 100% | 3700.21 | 929 / 929 | 0% | 0 | 0 / 0 |
spleen | 100% | 3233.21 | 241 / 241 | 0% | 0 | 0 / 0 |
skin | 35% | 41.72 | 634 / 1809 | 61% | 3.57 | 288 / 472 |
tonsil | 0% | 0 | 0 / 0 | 96% | 4.62 | 43 / 45 |
pancreas | 18% | 20.82 | 59 / 328 | 76% | 3.13 | 136 / 178 |
adipose | 87% | 167.76 | 1052 / 1204 | 0% | 0 | 0 / 0 |
brain | 23% | 32.19 | 612 / 2642 | 45% | 0.96 | 320 / 705 |
ovary | 19% | 24.74 | 35 / 180 | 28% | 0.53 | 119 / 430 |
blood vessel | 42% | 89.77 | 562 / 1335 | 0% | 0 | 0 / 0 |
adrenal gland | 26% | 25.97 | 68 / 258 | 10% | 0.14 | 23 / 230 |
heart | 19% | 23.32 | 165 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 14% | 0.35 | 11 / 80 |
muscle | 1% | 1.50 | 11 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0032481 | Biological process | positive regulation of type I interferon production |
GO_0002753 | Biological process | cytoplasmic pattern recognition receptor signaling pathway |
GO_0005741 | Cellular component | mitochondrial outer membrane |
GO_0000139 | Cellular component | Golgi membrane |
GO_0005886 | Cellular component | plasma membrane |
GO_0005765 | Cellular component | lysosomal membrane |
GO_0005739 | Cellular component | mitochondrion |
GO_0030674 | Molecular function | protein-macromolecule adaptor activity |
GO_0005515 | Molecular function | protein binding |
GO_0060090 | Molecular function | molecular adaptor activity |
Gene name | TRAF3IP3 |
Protein name | TRAF3-interacting JNK-activating modulator (TRAF3-interacting protein 3) TRAF3 interacting protein 3 |
Synonyms | T3JAM |
Description | FUNCTION: Adapter protein that plays essential roles in both innate and adaptive immunity. Plays a crucial role in the regulation of thymocyte development . Mechanistically, mediates TCR-stimulated activation through recruiting MAP2K1/MEK1 to the Golgi and, thereby, facilitating the interaction of MAP2K1/MEK1 with its activator BRAF . Also plays an essential role in regulatory T-cell stability and function by recruiting the serine-threonine phosphatase catalytic subunit (PPP2CA) to the lysosome, thereby facilitating the interaction of PP2Ac with the mTORC1 component RPTOR and restricting glycolytic metabolism . Positively regulates TLR4 signaling activity in macrophage-mediated inflammation by acting as a molecular clamp to facilitate LPS-induced translocation of TLR4 to lipid rafts . In response to viral infection, facilitates the recruitment of TRAF3 to MAVS within mitochondria leading to IRF3 activation and interferon production . However, participates in the maintenance of immune homeostasis and the prevention of overzealous innate immunity by promoting 'Lys-48'-dependent ubiquitination of TBK1 . . |
Accessions | ENST00000400959.7 ENST00000478359.5 [Q9Y228-3] E2QRE5 ENST00000487271.5 ENST00000367026.7 [Q9Y228-2] H0YF09 ENST00000477431.1 ENST00000367025.8 [Q9Y228-1] C9JBA0 ENST00000479796.5 C9JXB3 A0A0K2GUT3 C9J0C0 ENST00000471368.1 ENST00000367024.5 [Q9Y228-1] ENST00000367023.5 Q9Y228 B1AJU2 |