TMX4 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
natural killer cell	28 studies	24% ± 7%	Explore
CD8-positive, alpha-beta T cell	17 studies	23% ± 6%	Explore
CD4-positive, alpha-beta T cell	13 studies	21% ± 5%	Explore
regulatory T cell	13 studies	24% ± 5%	Explore
gamma-delta T cell	13 studies	26% ± 7%	Explore
fibroblast	12 studies	21% ± 6%	Explore
CD16-positive, CD56-dim natural killer cell, human	12 studies	29% ± 7%	Explore
classical monocyte	12 studies	24% ± 8%	Explore
mature NK T cell	12 studies	25% ± 6%	Explore
B cell	10 studies	21% ± 4%	Explore
T cell	10 studies	24% ± 9%	Explore
endothelial cell	10 studies	23% ± 5%	Explore
CD4-positive, alpha-beta memory T cell	10 studies	22% ± 5%	Explore
CD8-positive, alpha-beta memory T cell	10 studies	27% ± 7%	Explore
ciliated cell	10 studies	27% ± 17%	Explore
CD16-negative, CD56-bright natural killer cell, human	10 studies	29% ± 7%	Explore
mucosal invariant T cell	9 studies	27% ± 6%	Explore
mast cell	8 studies	24% ± 4%	Explore
endothelial cell of lymphatic vessel	8 studies	25% ± 7%	Explore
naive B cell	8 studies	21% ± 3%	Explore
effector memory CD8-positive, alpha-beta T cell	8 studies	25% ± 7%	Explore
neuron	8 studies	32% ± 10%	Explore
glutamatergic neuron	8 studies	39% ± 21%	Explore
memory B cell	8 studies	21% ± 3%	Explore
GABAergic neuron	8 studies	35% ± 18%	Explore
non-classical monocyte	6 studies	23% ± 7%	Explore
T follicular helper cell	6 studies	21% ± 5%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	5 studies	17% ± 1%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	5 studies	21% ± 4%	Explore
epithelial cell	5 studies	26% ± 9%	Explore
retinal rod cell	5 studies	26% ± 7%	Explore
innate lymphoid cell	5 studies	27% ± 6%	Explore
pancreatic A cell	4 studies	50% ± 14%	Explore
effector CD8-positive, alpha-beta T cell	4 studies	21% ± 5%	Explore
leukocyte	4 studies	21% ± 3%	Explore
conventional dendritic cell	4 studies	27% ± 10%	Explore
exhausted T cell	4 studies	26% ± 8%	Explore
hematopoietic precursor cell	4 studies	23% ± 6%	Explore
retinal ganglion cell	4 studies	59% ± 23%	Explore
lymphocyte	4 studies	25% ± 7%	Explore
pro-B cell	4 studies	23% ± 1%	Explore
amacrine cell	4 studies	30% ± 11%	Explore
retina horizontal cell	4 studies	26% ± 7%	Explore
retinal cone cell	4 studies	34% ± 8%	Explore
abnormal cell	4 studies	23% ± 3%	Explore
effector memory CD4-positive, alpha-beta T cell	4 studies	26% ± 5%	Explore
endothelial cell of artery	4 studies	18% ± 2%	Explore
interneuron	4 studies	44% ± 22%	Explore
smooth muscle cell	3 studies	21% ± 5%	Explore
basal cell	3 studies	18% ± 3%	Explore
pancreatic D cell	3 studies	53% ± 20%	Explore
type B pancreatic cell	3 studies	46% ± 14%	Explore
kidney loop of Henle epithelial cell	3 studies	23% ± 5%	Explore
precursor B cell	3 studies	27% ± 6%	Explore
myeloid cell	3 studies	27% ± 3%	Explore
Mueller cell	3 studies	24% ± 6%	Explore
oligodendrocyte precursor cell	3 studies	26% ± 6%	Explore
granulocyte	3 studies	18% ± 3%	Explore
enteroendocrine cell	3 studies	23% ± 8%	Explore
group 3 innate lymphoid cell	3 studies	35% ± 13%	Explore
hematopoietic stem cell	3 studies	16% ± 1%	Explore
effector memory CD8-positive, alpha-beta T cell, terminally differentiated	3 studies	22% ± 2%	Explore
astrocyte	3 studies	24% ± 3%	Explore
oligodendrocyte	3 studies	22% ± 3%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
peripheral blood	11 studies	24% ± 6%	Explore
brain	7 studies	33% ± 19%	Explore
lung	4 studies	18% ± 2%	Explore
eye	4 studies	27% ± 7%	Explore
pancreas	3 studies	46% ± 10%	Explore
kidney	3 studies	22% ± 1%	Explore
lymph node	3 studies	16% ± 0%	Explore
liver	3 studies	23% ± 6%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
prostate	100%	4356.75	244 / 245	100%	56.30	501 / 502
kidney	100%	3172.10	89 / 89	99%	64.01	895 / 901
thymus	100%	4282.34	651 / 653	99%	54.20	601 / 605
brain	99%	5262.80	2622 / 2642	100%	60.13	703 / 705
breast	100%	4322.21	459 / 459	98%	45.73	1099 / 1118
adrenal gland	100%	4526.05	257 / 258	98%	178.68	226 / 230
lung	99%	3593.80	574 / 578	98%	35.39	1133 / 1155
ovary	100%	6304.01	180 / 180	97%	28.66	416 / 430
uterus	100%	6585.89	170 / 170	96%	34.21	442 / 459
esophagus	98%	4414.19	1420 / 1445	98%	30.80	179 / 183
intestine	99%	5541.75	961 / 966	96%	27.42	507 / 527
stomach	100%	4177.32	359 / 359	95%	28.68	273 / 286
liver	97%	2164.67	219 / 226	98%	31.47	399 / 406
skin	99%	2841.18	1786 / 1809	95%	104.68	449 / 472
bladder	100%	5464.29	21 / 21	91%	26.19	460 / 504
pancreas	92%	1814.78	303 / 328	99%	39.13	176 / 178
adipose	100%	4503.51	1204 / 1204	0%	0	0 / 0
blood vessel	100%	5559.53	1335 / 1335	0%	0	0 / 0
muscle	100%	5083.74	803 / 803	0%	0	0 / 0
spleen	100%	2854.57	241 / 241	0%	0	0 / 0
ureter	0%	0	0 / 0	100%	9.94	1 / 1
lymph node	0%	0	0 / 0	97%	20.58	28 / 29
heart	96%	7993.81	830 / 861	0%	0	0 / 0
tonsil	0%	0	0 / 0	96%	24.16	43 / 45
peripheral blood	94%	5153.52	875 / 929	0%	0	0 / 0
eye	0%	0	0 / 0	55%	10.44	44 / 80
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0