Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 6535.99 | 459 / 459 | 100% | 94.74 | 1118 / 1118 |
esophagus | 100% | 6476.74 | 1445 / 1445 | 100% | 73.25 | 183 / 183 |
intestine | 100% | 7124.58 | 966 / 966 | 100% | 66.67 | 527 / 527 |
lung | 100% | 5332.46 | 578 / 578 | 100% | 69.25 | 1155 / 1155 |
uterus | 100% | 8562.15 | 170 / 170 | 100% | 91.32 | 459 / 459 |
prostate | 100% | 5792.79 | 245 / 245 | 100% | 56.70 | 501 / 502 |
ovary | 100% | 7845.38 | 180 / 180 | 100% | 58.98 | 429 / 430 |
stomach | 100% | 4925.24 | 359 / 359 | 100% | 61.11 | 285 / 286 |
bladder | 100% | 7140.29 | 21 / 21 | 100% | 66.72 | 502 / 504 |
thymus | 100% | 5994.14 | 653 / 653 | 100% | 61.01 | 602 / 605 |
brain | 100% | 5034.36 | 2633 / 2642 | 100% | 74.69 | 703 / 705 |
skin | 100% | 8729.11 | 1809 / 1809 | 99% | 82.95 | 469 / 472 |
kidney | 100% | 3990.01 | 89 / 89 | 98% | 42.11 | 880 / 901 |
pancreas | 99% | 3040.22 | 324 / 328 | 99% | 54.20 | 176 / 178 |
adrenal gland | 100% | 5320.40 | 258 / 258 | 95% | 55.84 | 219 / 230 |
liver | 100% | 2275.16 | 226 / 226 | 92% | 28.15 | 374 / 406 |
adipose | 100% | 6378.47 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 6709.62 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 92.39 | 29 / 29 |
spleen | 100% | 6763.32 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 87.56 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 19.07 | 1 / 1 |
muscle | 100% | 3483.30 | 799 / 803 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 98% | 55.18 | 78 / 80 |
heart | 97% | 3109.99 | 833 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 85% | 5343.85 | 786 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006366 | Biological process | transcription by RNA polymerase II |
GO_0006368 | Biological process | transcription elongation by RNA polymerase II |
GO_0006281 | Biological process | DNA repair |
GO_0006337 | Biological process | nucleosome disassembly |
GO_0032786 | Biological process | positive regulation of DNA-templated transcription, elongation |
GO_0006260 | Biological process | DNA replication |
GO_0006334 | Biological process | nucleosome assembly |
GO_0035101 | Cellular component | FACT complex |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0031491 | Molecular function | nucleosome binding |
GO_0005515 | Molecular function | protein binding |
GO_0003723 | Molecular function | RNA binding |
Gene name | SUPT16H |
Protein name | FACT complex subunit SPT16 homolog, facilitates chromatin remodeling subunit FACT complex subunit SPT16 (Chromatin-specific transcription elongation factor 140 kDa subunit) (FACT 140 kDa subunit) (FACTp140) (Facilitates chromatin transcription complex subunit SPT16) (hSPT16) |
Synonyms | FACT140 FACTP140 |
Description | FUNCTION: Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of the nucleosome following the passage of RNA polymerase II. The FACT complex is probably also involved in phosphorylation of 'Ser-392' of p53/TP53 via its association with CK2 (casein kinase II). . FUNCTION: Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of the nucleosome following the passage of RNA polymerase II. . |
Accessions | ENST00000216297.7 G3V401 Q9Y5B9 G3V5A4 ENST00000557652.1 ENST00000555943.1 Q0VGA3 ENST00000556309.5 G3V2X0 |