Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 2539.77 | 1445 / 1445 | 100% | 21.04 | 183 / 183 |
lung | 100% | 2879.05 | 578 / 578 | 100% | 29.72 | 1155 / 1155 |
ovary | 100% | 2424.18 | 180 / 180 | 100% | 16.35 | 430 / 430 |
breast | 100% | 2619.39 | 459 / 459 | 100% | 35.49 | 1117 / 1118 |
prostate | 100% | 2689.77 | 245 / 245 | 100% | 30.02 | 501 / 502 |
uterus | 100% | 2477.32 | 170 / 170 | 100% | 25.66 | 458 / 459 |
stomach | 100% | 2551.74 | 359 / 359 | 100% | 18.88 | 285 / 286 |
brain | 100% | 2026.64 | 2629 / 2642 | 100% | 20.61 | 705 / 705 |
pancreas | 100% | 3352.52 | 328 / 328 | 99% | 20.96 | 177 / 178 |
intestine | 100% | 2505.86 | 966 / 966 | 99% | 20.29 | 523 / 527 |
bladder | 100% | 2425.43 | 21 / 21 | 99% | 21.55 | 500 / 504 |
thymus | 100% | 2723.58 | 653 / 653 | 99% | 22.44 | 600 / 605 |
skin | 100% | 3362.14 | 1809 / 1809 | 99% | 23.52 | 467 / 472 |
liver | 100% | 3274.09 | 226 / 226 | 99% | 17.00 | 400 / 406 |
adrenal gland | 100% | 3484.82 | 258 / 258 | 98% | 22.94 | 226 / 230 |
kidney | 100% | 2785.13 | 89 / 89 | 98% | 18.08 | 884 / 901 |
adipose | 100% | 2530.70 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 25.35 | 29 / 29 |
muscle | 100% | 2427.28 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 3106.19 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 22.60 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 7.64 | 1 / 1 |
blood vessel | 100% | 2733.56 | 1334 / 1335 | 0% | 0 | 0 / 0 |
heart | 97% | 1982.07 | 832 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 95% | 12.31 | 76 / 80 |
peripheral blood | 94% | 2786.47 | 869 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006616 | Biological process | SRP-dependent cotranslational protein targeting to membrane, translocation |
GO_0030593 | Biological process | neutrophil chemotaxis |
GO_0031017 | Biological process | exocrine pancreas development |
GO_0045047 | Biological process | protein targeting to ER |
GO_0030851 | Biological process | granulocyte differentiation |
GO_0006617 | Biological process | SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition |
GO_0006614 | Biological process | SRP-dependent cotranslational protein targeting to membrane |
GO_0005730 | Cellular component | nucleolus |
GO_0016607 | Cellular component | nuclear speck |
GO_0005783 | Cellular component | endoplasmic reticulum |
GO_0005829 | Cellular component | cytosol |
GO_0005737 | Cellular component | cytoplasm |
GO_0005786 | Cellular component | signal recognition particle, endoplasmic reticulum targeting |
GO_0005634 | Cellular component | nucleus |
GO_0019003 | Molecular function | GDP binding |
GO_0003924 | Molecular function | GTPase activity |
GO_0030942 | Molecular function | endoplasmic reticulum signal peptide binding |
GO_0043021 | Molecular function | ribonucleoprotein complex binding |
GO_0005525 | Molecular function | GTP binding |
GO_0008312 | Molecular function | 7S RNA binding |
GO_0003723 | Molecular function | RNA binding |
GO_0005515 | Molecular function | protein binding |
GO_0016887 | Molecular function | ATP hydrolysis activity |
Gene name | SRP54 |
Protein name | Signal recognition particle subunit SRP54 (EC 3.6.5.4) (Signal recognition particle 54 kDa protein) Signal recognition particle 54 Signal recognition particle 54 kDa protein (EC 3.6.5.-) |
Synonyms | |
Description | FUNCTION: Component of the signal recognition particle (SRP) complex, a ribonucleoprotein complex that mediates the cotranslational targeting of secretory and membrane proteins to the endoplasmic reticulum (ER) . As part of the SRP complex, associates with the SRP receptor (SR) component SRPRA to target secretory proteins to the endoplasmic reticulum membrane . Binds to the signal sequence of presecretory proteins when they emerge from the ribosomes . Displays basal GTPase activity, and stimulates reciprocal GTPase activation of the SR subunit SRPRA . Forms a guanosine 5'-triphosphate (GTP)-dependent complex with the SR subunit SRPRA . SR compaction and GTPase mediated rearrangement of SR drive SRP-mediated cotranslational protein translocation into the ER . Requires the presence of SRP9/SRP14 and/or SRP19 to stably interact with RNA (By similarity). Plays a role in proliferation and differentiation of granulocytic cells, neutrophils migration capacity and exocrine pancreas development . . FUNCTION: Component of the signal recognition particle (SRP) complex, a ribonucleoprotein complex that mediates the cotranslational targeting of secretory and membrane proteins to the endoplasmic reticulum (ER). As part of the SRP complex, associates with the SRP receptor (SR) component SRPRA to target secretory proteins to the endoplasmic reticulum membrane. Binds to the signal sequence of presecretory proteins when they emerge from the ribosomes. Displays basal GTPase activity, and stimulates reciprocal GTPase activation of the SR subunit SRPRA. Forms a guanosine 5'-triphosphate (GTP)-dependent complex with the SR subunit SRPRA. SR compaction and GTPase mediated rearrangement of SR drive SRP-mediated cotranslational protein translocation into the ER. Requires the presence of SRP9/SRP14 and/or SRP19 to stably interact with RNA. Plays a role in proliferation and differentiation of granulocytic cells, neutrophils migration capacity and exocrine pancreas development. . FUNCTION: Component of the signal recognition particle (SRP) complex, a ribonucleoprotein complex that mediates the cotranslational targeting of secretory and membrane proteins to the endoplasmic reticulum (ER). As part of the SRP complex, associates with the SRP receptor (SR) component SRPRA to target secretory proteins to the endoplasmic reticulum membrane. Binds to the signal sequence of presecretory proteins when they emerge from the ribosomes. Displays basal GTPase activity, and stimulates reciprocal GTPase activation of the SR subunit SRPRA. Forms a guanosine 5'-triphosphate (GTP)-dependent complex with the SR subunit SRPRA. SR compaction and GTPase mediated rearrangement of SR drive SRP-mediated cotranslational protein translocation into the ER. Requires the presence of SRP9/SRP14 and/or SRP19 to stably interact with RNA. Plays a role in proliferation and differentiation of granulocytic cells, neutrophils migration capacity and exocrine pancreas development. . FUNCTION: Component of the signal recognition particle (SRP) complex, a ribonucleoprotein complex that mediates the cotranslational targeting of secretory and membrane proteins to the endoplasmic reticulum (ER). As part of the SRP complex, associates with the SRP receptor (SR) component SRPRA to target secretory proteins to the endoplasmic reticulum membrane. Binds to the signal sequence of presecretory proteins when they emerge from the ribosomes. Displays basal GTPase activity, and stimulates reciprocal GTPase activation of the SR subunit SRPRA. Forms a guanosine 5'-triphosphate (GTP)-dependent complex with the SR subunit SRPRA. SR compaction and GTPase mediated rearrangement of SR drive SRP-mediated cotranslational protein translocation into the ER. Requires the presence of SRP9/SRP14 and/or SRP19 to stably interact with RNA. Plays a role in proliferation and differentiation of granulocytic cells, neutrophils migration capacity and exocrine pancreas development. . FUNCTION: Component of the signal recognition particle (SRP) complex, a ribonucleoprotein complex that mediates the cotranslational targeting of secretory and membrane proteins to the endoplasmic reticulum (ER). As part of the SRP complex, associates with the SRP receptor (SR) component SRPRA to target secretory proteins to the endoplasmic reticulum membrane. Binds to the signal sequence of presecretory proteins when they emerge from the ribosomes. Displays basal GTPase activity, and stimulates reciprocal GTPase activation of the SR subunit SRPRA. Forms a guanosine 5'-triphosphate (GTP)-dependent complex with the SR subunit SRPRA. SR compaction and GTPase mediated rearrangement of SR drive SRP-mediated cotranslational protein translocation into the ER. Requires the presence of SRP9/SRP14 and/or SRP19 to stably interact with RNA. Plays a role in proliferation and differentiation of granulocytic cells, neutrophils migration capacity and exocrine pancreas development. . FUNCTION: Component of the signal recognition particle (SRP) complex, a ribonucleoprotein complex that mediates the cotranslational targeting of secretory and membrane proteins to the endoplasmic reticulum (ER). As part of the SRP complex, associates with the SRP receptor (SR) component SRPRA to target secretory proteins to the endoplasmic reticulum membrane. Binds to the signal sequence of presecretory proteins when they emerge from the ribosomes. Displays basal GTPase activity, and stimulates reciprocal GTPase activation of the SR subunit SRPRA. Forms a guanosine 5'-triphosphate (GTP)-dependent complex with the SR subunit SRPRA. SR compaction and GTPase mediated rearrangement of SR drive SRP-mediated cotranslational protein translocation into the ER. Requires the presence of SRP9/SRP14 and/or SRP19 to stably interact with RNA. Plays a role in proliferation and differentiation of granulocytic cells, neutrophils migration capacity and exocrine pancreas development. . |
Accessions | G3V480 ENST00000678627.1 ENST00000555557.5 A0A7I2V5S0 A0A7I2V5K0 ENST00000546080.6 ENST00000677647.1 [P61011-1] ENST00000678274.1 ENST00000678477.1 G3V346 ENST00000678519.1 G3V3L9 P61011 G3V4F7 ENST00000554803.5 A0A7I2V591 ENST00000556380.3 A0A7P0PJI2 A0A7I2V584 ENST00000216774.11 [P61011-1] ENST00000555746.6 ENST00000678963.1 [P61011-1] ENST00000556994.5 [P61011-1] ENST00000678836.1 |