SDF4 | OmnibusX

I. Expression across cell types

Name	Number of supported studies	Average coverage
fibroblast	30 studies	29% ± 11%	Explore
natural killer cell	27 studies	29% ± 9%	Explore
endothelial cell	22 studies	29% ± 12%	Explore
regulatory T cell	19 studies	29% ± 6%	Explore
macrophage	18 studies	24% ± 7%	Explore
CD4-positive, alpha-beta T cell	17 studies	23% ± 6%	Explore
CD8-positive, alpha-beta T cell	16 studies	24% ± 6%	Explore
CD16-positive, CD56-dim natural killer cell, human	14 studies	33% ± 11%	Explore
pericyte	14 studies	26% ± 9%	Explore
T cell	13 studies	21% ± 3%	Explore
classical monocyte	13 studies	25% ± 9%	Explore
capillary endothelial cell	12 studies	21% ± 7%	Explore
gamma-delta T cell	12 studies	24% ± 5%	Explore
CD16-negative, CD56-bright natural killer cell, human	11 studies	31% ± 8%	Explore
connective tissue cell	11 studies	32% ± 13%	Explore
myofibroblast cell	11 studies	26% ± 7%	Explore
endothelial cell of lymphatic vessel	10 studies	27% ± 7%	Explore
plasma cell	10 studies	42% ± 13%	Explore
B cell	10 studies	20% ± 5%	Explore
mature NK T cell	10 studies	26% ± 8%	Explore
endothelial cell of artery	10 studies	25% ± 7%	Explore
epithelial cell	10 studies	38% ± 22%	Explore
plasmablast	9 studies	44% ± 25%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	9 studies	17% ± 2%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	9 studies	20% ± 2%	Explore
plasmacytoid dendritic cell	9 studies	27% ± 9%	Explore
CD8-positive, alpha-beta memory T cell	8 studies	23% ± 7%	Explore
ciliated cell	8 studies	28% ± 12%	Explore
naive B cell	8 studies	18% ± 2%	Explore
smooth muscle cell	8 studies	26% ± 6%	Explore
mucosal invariant T cell	8 studies	23% ± 2%	Explore
conventional dendritic cell	7 studies	33% ± 14%	Explore
CD4-positive, alpha-beta memory T cell	7 studies	27% ± 8%	Explore
basal cell	7 studies	31% ± 12%	Explore
monocyte	7 studies	23% ± 5%	Explore
non-classical monocyte	7 studies	27% ± 10%	Explore
abnormal cell	7 studies	24% ± 6%	Explore
dendritic cell	7 studies	29% ± 15%	Explore
memory B cell	7 studies	18% ± 3%	Explore
enterocyte	6 studies	27% ± 9%	Explore
goblet cell	6 studies	25% ± 8%	Explore
vein endothelial cell	6 studies	26% ± 11%	Explore
innate lymphoid cell	6 studies	26% ± 8%	Explore
T follicular helper cell	6 studies	24% ± 3%	Explore
endothelial cell of vascular tree	6 studies	23% ± 7%	Explore
mast cell	5 studies	20% ± 5%	Explore
effector CD8-positive, alpha-beta T cell	5 studies	24% ± 7%	Explore
effector memory CD8-positive, alpha-beta T cell	5 studies	23% ± 5%	Explore
mesothelial cell	5 studies	32% ± 17%	Explore
transit amplifying cell	5 studies	19% ± 3%	Explore
myeloid cell	5 studies	28% ± 9%	Explore
hematopoietic precursor cell	4 studies	25% ± 7%	Explore
secretory cell	4 studies	33% ± 8%	Explore
pancreatic A cell	4 studies	30% ± 11%	Explore
exhausted T cell	4 studies	28% ± 5%	Explore
IgA plasma cell	4 studies	27% ± 9%	Explore
type I pneumocyte	4 studies	27% ± 7%	Explore
adventitial cell	4 studies	30% ± 9%	Explore
effector memory CD4-positive, alpha-beta T cell	4 studies	31% ± 8%	Explore
respiratory goblet cell	3 studies	31% ± 9%	Explore
squamous epithelial cell	3 studies	34% ± 25%	Explore
glomerular endothelial cell	3 studies	22% ± 4%	Explore
neuron	3 studies	27% ± 12%	Explore
IgG plasma cell	3 studies	28% ± 10%	Explore
extravillous trophoblast	3 studies	38% ± 15%	Explore
common myeloid progenitor	3 studies	28% ± 12%	Explore
lymphocyte	3 studies	28% ± 8%	Explore
precursor B cell	3 studies	20% ± 2%	Explore
progenitor cell	3 studies	24% ± 4%	Explore
serous secreting cell	3 studies	18% ± 1%	Explore
effector CD4-positive, alpha-beta T cell	3 studies	34% ± 11%	Explore
oligodendrocyte precursor cell	3 studies	23% ± 7%	Explore
enteroendocrine cell	3 studies	31% ± 12%	Explore
group 3 innate lymphoid cell	3 studies	28% ± 8%	Explore
mononuclear phagocyte	3 studies	29% ± 15%	Explore
T-helper 1 cell	3 studies	36% ± 11%	Explore
T-helper 17 cell	3 studies	26% ± 7%	Explore

II. Expression across tissues

Name	Number of supported studies	Average coverage
peripheral blood	13 studies	24% ± 5%	Explore
lung	9 studies	28% ± 8%	Explore
intestine	8 studies	25% ± 11%	Explore
kidney	4 studies	22% ± 5%	Explore
lymph node	4 studies	24% ± 13%	Explore
brain	4 studies	28% ± 10%	Explore
pancreas	3 studies	32% ± 9%	Explore
placenta	3 studies	27% ± 7%	Explore
eye	3 studies	18% ± 3%	Explore
uterus	3 studies	31% ± 12%	Explore
breast	3 studies	18% ± 4%	Explore
liver	3 studies	25% ± 11%	Explore

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
esophagus	100%	6549.07	1445 / 1445	100%	105.88	183 / 183
liver	100%	8223.14	226 / 226	100%	95.35	406 / 406
ovary	100%	7991.23	180 / 180	100%	102.21	430 / 430
pancreas	100%	5474.47	328 / 328	100%	114.91	178 / 178
skin	100%	8847.29	1809 / 1809	100%	147.01	472 / 472
thymus	100%	8717.16	653 / 653	100%	119.88	604 / 605
uterus	100%	8150.50	170 / 170	100%	116.65	458 / 459
intestine	100%	8470.08	966 / 966	100%	130.50	525 / 527
kidney	100%	7710.78	89 / 89	100%	111.99	897 / 901
prostate	100%	8180.17	245 / 245	99%	150.51	499 / 502
brain	99%	5111.51	2624 / 2642	100%	91.18	705 / 705
stomach	100%	6937.29	359 / 359	99%	113.99	284 / 286
lung	100%	8205.53	577 / 578	99%	113.95	1148 / 1155
breast	100%	7951.02	459 / 459	99%	100.54	1105 / 1118
bladder	100%	7954.71	21 / 21	99%	118.06	497 / 504
adrenal gland	100%	8523.29	258 / 258	98%	88.90	225 / 230
adipose	100%	8080.92	1204 / 1204	0%	0	0 / 0
eye	0%	0	0 / 0	100%	92.21	80 / 80
lymph node	0%	0	0 / 0	100%	79.76	29 / 29
spleen	100%	7998.12	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	104.73	45 / 45
ureter	0%	0	0 / 0	100%	80.67	1 / 1
blood vessel	100%	9742.09	1334 / 1335	0%	0	0 / 0
heart	100%	7710.53	859 / 861	0%	0	0 / 0
muscle	99%	4314.80	797 / 803	0%	0	0 / 0
peripheral blood	97%	4578.97	903 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0

III. Associated gene sets

GO_0021549	Biological process	cerebellum development
GO_0017156	Biological process	calcium-ion regulated exocytosis
GO_0099558	Biological process	maintenance of synapse structure
GO_0045471	Biological process	response to ethanol
GO_0009650	Biological process	UV protection
GO_0045444	Biological process	fat cell differentiation
GO_0070625	Biological process	zymogen granule exocytosis
GO_0032059	Cellular component	bleb
GO_0005796	Cellular component	Golgi lumen
GO_0070062	Cellular component	extracellular exosome
GO_0005783	Cellular component	endoplasmic reticulum
GO_0005770	Cellular component	late endosome
GO_0005886	Cellular component	plasma membrane
GO_0016020	Cellular component	membrane
GO_0005737	Cellular component	cytoplasm
GO_0005509	Molecular function	calcium ion binding
GO_0042802	Molecular function	identical protein binding
GO_0005515	Molecular function	protein binding

IV. Literature review

[source]

Gene name	SDF4
Protein name	45 kDa calcium-binding protein (Cab45) (Stromal cell-derived factor 4) (SDF-4) Stromal cell derived factor 4 45 kDa calcium-binding protein (Stromal cell-derived factor 4)
Synonyms	hCG_19193 CAB45 PSEC0034
Description	FUNCTION: May regulate calcium-dependent activities in the endoplasmic reticulum lumen or post-ER compartment. .; FUNCTION: Isoform 5 may be involved in the exocytosis of zymogens by pancreatic acini.
Accessions	ENST00000403997.2 ENST00000465727.5 ENST00000360001.12 ENST00000263741.12 G3V1E2 Q9BRK5 A0A5F9UP49 H0Y3T6 A0A5F9UJX7

SDF4 report

I. Expression across cell types

II. Expression across tissues

III. Associated gene sets

IV. Literature review