SCAMP2 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
macrophage	28 studies	29% ± 12%	Explore
regulatory T cell	18 studies	28% ± 8%	Explore
natural killer cell	17 studies	23% ± 6%	Explore
CD8-positive, alpha-beta T cell	15 studies	29% ± 8%	Explore
conventional dendritic cell	14 studies	28% ± 14%	Explore
plasmacytoid dendritic cell	14 studies	36% ± 12%	Explore
CD16-positive, CD56-dim natural killer cell, human	13 studies	23% ± 7%	Explore
CD4-positive, alpha-beta T cell	13 studies	23% ± 5%	Explore
B cell	12 studies	21% ± 4%	Explore
classical monocyte	12 studies	29% ± 11%	Explore
T cell	11 studies	21% ± 6%	Explore
non-classical monocyte	11 studies	31% ± 11%	Explore
gamma-delta T cell	11 studies	25% ± 5%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	10 studies	21% ± 3%	Explore
mature NK T cell	10 studies	22% ± 5%	Explore
plasma cell	9 studies	36% ± 10%	Explore
CD8-positive, alpha-beta memory T cell	9 studies	26% ± 9%	Explore
CD16-negative, CD56-bright natural killer cell, human	9 studies	22% ± 4%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	9 studies	20% ± 4%	Explore
mucosal invariant T cell	9 studies	21% ± 4%	Explore
myeloid cell	9 studies	28% ± 10%	Explore
monocyte	9 studies	21% ± 9%	Explore
memory B cell	9 studies	24% ± 5%	Explore
CD4-positive, alpha-beta memory T cell	8 studies	27% ± 7%	Explore
endothelial cell	8 studies	22% ± 5%	Explore
epithelial cell	8 studies	35% ± 13%	Explore
naive B cell	8 studies	19% ± 4%	Explore
type I pneumocyte	7 studies	26% ± 6%	Explore
ciliated cell	7 studies	27% ± 8%	Explore
dendritic cell	7 studies	32% ± 16%	Explore
microglial cell	7 studies	31% ± 9%	Explore
plasmablast	6 studies	43% ± 25%	Explore
effector memory CD8-positive, alpha-beta T cell	6 studies	27% ± 8%	Explore
T follicular helper cell	5 studies	22% ± 3%	Explore
effector CD8-positive, alpha-beta T cell	5 studies	36% ± 9%	Explore
mast cell	5 studies	24% ± 9%	Explore
hematopoietic precursor cell	4 studies	23% ± 7%	Explore
squamous epithelial cell	4 studies	34% ± 22%	Explore
leukocyte	4 studies	22% ± 6%	Explore
exhausted T cell	4 studies	39% ± 2%	Explore
basal cell	4 studies	32% ± 13%	Explore
fibroblast	4 studies	24% ± 9%	Explore
abnormal cell	4 studies	20% ± 3%	Explore
effector CD4-positive, alpha-beta T cell	4 studies	37% ± 4%	Explore
effector memory CD4-positive, alpha-beta T cell	4 studies	31% ± 7%	Explore
goblet cell	4 studies	28% ± 4%	Explore
effector memory CD8-positive, alpha-beta T cell, terminally differentiated	4 studies	27% ± 8%	Explore
club cell	3 studies	22% ± 4%	Explore
respiratory goblet cell	3 studies	31% ± 9%	Explore
secretory cell	3 studies	29% ± 11%	Explore
intermediate monocyte	3 studies	36% ± 11%	Explore
glutamatergic neuron	3 studies	26% ± 2%	Explore
mononuclear phagocyte	3 studies	28% ± 14%	Explore
oligodendrocyte	3 studies	24% ± 4%	Explore
hematopoietic stem cell	3 studies	23% ± 2%	Explore
double negative thymocyte	3 studies	29% ± 4%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
peripheral blood	12 studies	25% ± 4%	Explore
lung	7 studies	22% ± 10%	Explore
brain	6 studies	24% ± 8%	Explore
intestine	4 studies	19% ± 4%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
esophagus	100%	6647.58	1445 / 1445	100%	93.01	183 / 183
intestine	100%	6777.81	966 / 966	100%	106.12	527 / 527
pancreas	100%	3564.22	328 / 328	100%	93.65	178 / 178
prostate	100%	4566.20	245 / 245	100%	92.72	502 / 502
skin	100%	6571.61	1809 / 1809	100%	84.46	472 / 472
stomach	100%	5344.35	359 / 359	100%	99.34	286 / 286
kidney	100%	4915.97	89 / 89	100%	82.17	900 / 901
lung	100%	6469.02	578 / 578	100%	90.22	1153 / 1155
uterus	100%	4151.59	170 / 170	100%	82.58	458 / 459
ovary	100%	3067.38	180 / 180	100%	87.11	429 / 430
thymus	100%	5101.90	652 / 653	100%	81.26	604 / 605
bladder	100%	4185.81	21 / 21	99%	82.15	501 / 504
breast	100%	5169.24	459 / 459	99%	90.19	1111 / 1118
liver	100%	2789.65	225 / 226	100%	48.31	405 / 406
adrenal gland	100%	5642.10	258 / 258	98%	51.44	226 / 230
brain	93%	1750.25	2454 / 2642	100%	64.92	705 / 705
adipose	100%	5024.99	1204 / 1204	0%	0	0 / 0
eye	0%	0	0 / 0	100%	71.22	80 / 80
lymph node	0%	0	0 / 0	100%	97.73	29 / 29
spleen	100%	8257.85	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	81.52	45 / 45
ureter	0%	0	0 / 0	100%	51.16	1 / 1
blood vessel	100%	3698.03	1331 / 1335	0%	0	0 / 0
peripheral blood	99%	5970.37	918 / 929	0%	0	0 / 0
heart	98%	2757.23	843 / 861	0%	0	0 / 0
muscle	96%	2550.41	774 / 803	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0