RAB1B | OmnibusX

I. Expression across cell types

Name	Number of supported studies	Average coverage
natural killer cell	19 studies	27% ± 10%	Explore
CD8-positive, alpha-beta T cell	16 studies	31% ± 10%	Explore
classical monocyte	14 studies	25% ± 8%	Explore
regulatory T cell	14 studies	27% ± 7%	Explore
CD16-positive, CD56-dim natural killer cell, human	13 studies	30% ± 8%	Explore
B cell	11 studies	21% ± 5%	Explore
non-classical monocyte	11 studies	28% ± 10%	Explore
endothelial cell	11 studies	26% ± 8%	Explore
CD4-positive, alpha-beta T cell	11 studies	27% ± 10%	Explore
naive B cell	11 studies	18% ± 3%	Explore
gamma-delta T cell	11 studies	28% ± 6%	Explore
CD16-negative, CD56-bright natural killer cell, human	10 studies	30% ± 9%	Explore
memory B cell	10 studies	19% ± 3%	Explore
CD8-positive, alpha-beta memory T cell	9 studies	28% ± 11%	Explore
mature NK T cell	9 studies	29% ± 8%	Explore
mucosal invariant T cell	9 studies	23% ± 4%	Explore
plasmacytoid dendritic cell	9 studies	27% ± 6%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	9 studies	21% ± 6%	Explore
CD4-positive, alpha-beta memory T cell	8 studies	26% ± 9%	Explore
ciliated cell	8 studies	30% ± 12%	Explore
epithelial cell	8 studies	31% ± 14%	Explore
T cell	7 studies	27% ± 8%	Explore
platelet	7 studies	33% ± 16%	Explore
effector memory CD8-positive, alpha-beta T cell	7 studies	25% ± 9%	Explore
fibroblast	7 studies	24% ± 6%	Explore
macrophage	7 studies	20% ± 5%	Explore
basal cell	6 studies	31% ± 13%	Explore
conventional dendritic cell	6 studies	29% ± 14%	Explore
monocyte	5 studies	18% ± 4%	Explore
pericyte	5 studies	22% ± 8%	Explore
endothelial cell of lymphatic vessel	5 studies	22% ± 6%	Explore
T follicular helper cell	5 studies	22% ± 3%	Explore
effector CD8-positive, alpha-beta T cell	5 studies	39% ± 10%	Explore
dendritic cell	5 studies	28% ± 12%	Explore
exhausted T cell	4 studies	40% ± 6%	Explore
precursor B cell	4 studies	23% ± 7%	Explore
smooth muscle cell	4 studies	23% ± 5%	Explore
abnormal cell	4 studies	34% ± 13%	Explore
effector CD4-positive, alpha-beta T cell	4 studies	41% ± 8%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	4 studies	20% ± 4%	Explore
effector memory CD4-positive, alpha-beta T cell	4 studies	27% ± 11%	Explore
hematopoietic stem cell	4 studies	26% ± 15%	Explore
effector memory CD8-positive, alpha-beta T cell, terminally differentiated	4 studies	26% ± 5%	Explore
plasmablast	3 studies	50% ± 16%	Explore
respiratory goblet cell	3 studies	23% ± 8%	Explore
secretory cell	3 studies	36% ± 14%	Explore
squamous epithelial cell	3 studies	33% ± 17%	Explore
hematopoietic precursor cell	3 studies	21% ± 3%	Explore
megakaryocyte	3 studies	39% ± 17%	Explore
capillary endothelial cell	3 studies	29% ± 15%	Explore
myofibroblast cell	3 studies	30% ± 6%	Explore
pro-B cell	3 studies	22% ± 5%	Explore
type I pneumocyte	3 studies	31% ± 8%	Explore
type II pneumocyte	3 studies	27% ± 11%	Explore
vein endothelial cell	3 studies	25% ± 10%	Explore
myeloid cell	3 studies	31% ± 1%	Explore
intermediate monocyte	3 studies	34% ± 15%	Explore
enteroendocrine cell	3 studies	24% ± 8%	Explore
goblet cell	3 studies	26% ± 4%	Explore
group 3 innate lymphoid cell	3 studies	20% ± 5%	Explore
double negative thymocyte	3 studies	30% ± 4%	Explore
connective tissue cell	3 studies	17% ± 1%	Explore

II. Expression across tissues

Name	Number of supported studies	Average coverage
peripheral blood	9 studies	25% ± 3%	Explore
lung	7 studies	25% ± 12%	Explore
bone marrow	3 studies	19% ± 3%	Explore
kidney	3 studies	28% ± 7%	Explore
lymph node	3 studies	20% ± 3%	Explore
brain	3 studies	23% ± 8%	Explore

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
esophagus	100%	6097.81	1445 / 1445	100%	133.37	183 / 183
ovary	100%	4327.43	180 / 180	100%	167.11	430 / 430
prostate	100%	6069.27	245 / 245	100%	204.25	501 / 502
brain	100%	3351.86	2636 / 2642	100%	120.76	705 / 705
stomach	100%	4433.48	359 / 359	99%	135.09	284 / 286
intestine	100%	5315.55	966 / 966	99%	131.04	523 / 527
skin	100%	5860.59	1809 / 1809	99%	133.39	468 / 472
lung	100%	5203.61	578 / 578	99%	125.46	1145 / 1155
pancreas	100%	2359.86	327 / 328	99%	115.23	177 / 178
breast	100%	5549.66	459 / 459	99%	160.39	1104 / 1118
thymus	100%	5067.05	653 / 653	98%	120.59	595 / 605
kidney	100%	4828.15	89 / 89	98%	100.72	883 / 901
bladder	100%	4941.67	21 / 21	97%	127.61	491 / 504
uterus	100%	4910.25	170 / 170	97%	116.17	447 / 459
liver	100%	2717.48	226 / 226	94%	63.28	383 / 406
adrenal gland	100%	5365.39	258 / 258	93%	89.26	215 / 230
adipose	100%	5410.52	1204 / 1204	0%	0	0 / 0
blood vessel	100%	5678.74	1335 / 1335	0%	0	0 / 0
eye	0%	0	0 / 0	100%	159.35	80 / 80
lymph node	0%	0	0 / 0	100%	104.59	29 / 29
muscle	100%	5833.01	803 / 803	0%	0	0 / 0
spleen	100%	5285.86	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	134.97	45 / 45
ureter	0%	0	0 / 0	100%	96.56	1 / 1
peripheral blood	100%	6729.99	926 / 929	0%	0	0 / 0
heart	100%	3706.03	857 / 861	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0

III. Associated gene sets

GO_0000045	Biological process	autophagosome assembly
GO_0006886	Biological process	intracellular protein transport
GO_0007030	Biological process	Golgi organization
GO_2000785	Biological process	regulation of autophagosome assembly
GO_0019068	Biological process	virion assembly
GO_0090557	Biological process	establishment of endothelial intestinal barrier
GO_1903020	Biological process	positive regulation of glycoprotein metabolic process
GO_0006888	Biological process	endoplasmic reticulum to Golgi vesicle-mediated transport
GO_0048471	Cellular component	perinuclear region of cytoplasm
GO_0012505	Cellular component	endomembrane system
GO_0005789	Cellular component	endoplasmic reticulum membrane
GO_0034045	Cellular component	phagophore assembly site membrane
GO_0070062	Cellular component	extracellular exosome
GO_0005794	Cellular component	Golgi apparatus
GO_0033116	Cellular component	endoplasmic reticulum-Golgi intermediate compartment membrane
GO_0000139	Cellular component	Golgi membrane
GO_0005829	Cellular component	cytosol
GO_0030133	Cellular component	transport vesicle
GO_0003925	Molecular function	G protein activity
GO_0005525	Molecular function	GTP binding
GO_0005515	Molecular function	protein binding
GO_0003924	Molecular function	GTPase activity

IV. Literature review

[source]

Gene name	RAB1B
Protein name	small monomeric GTPase (EC 3.6.5.2) Ras-related protein Rab-1B (EC 3.6.5.2) Ras-related protein Rab-1A
Synonyms
Description	FUNCTION: The small GTPases Rab are key regulators of intracellular membrane trafficking, from the formation of transport vesicles to their fusion with membranes . Rabs cycle between an inactive GDP-bound form and an active GTP-bound form that is able to recruit to membranes different set of downstream effectors directly responsible for vesicle formation, movement, tethering and fusion . Plays a role in the initial events of the autophagic vacuole development which take place at specialized regions of the endoplasmic reticulum . Regulates vesicular transport between the endoplasmic reticulum and successive Golgi compartments (By similarity). Required to modulate the compacted morphology of the Golgi . Promotes the recruitment of lipid phosphatase MTMR6 to the endoplasmic reticulum-Golgi intermediate compartment (By similarity). .
Accessions	E9PLD0 Q9H0U4 ENST00000311481.11 Q6FIG4 ENST00000527397.1

RAB1B report

I. Expression across cell types

II. Expression across tissues

III. Associated gene sets

IV. Literature review