PTMS report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
endothelial cell	41 studies	53% ± 20%	Explore
fibroblast	39 studies	56% ± 20%	Explore
pericyte	34 studies	64% ± 24%	Explore
macrophage	28 studies	35% ± 15%	Explore
smooth muscle cell	27 studies	64% ± 23%	Explore
endothelial cell of lymphatic vessel	22 studies	69% ± 22%	Explore
basal cell	18 studies	47% ± 16%	Explore
connective tissue cell	18 studies	57% ± 23%	Explore
conventional dendritic cell	18 studies	35% ± 8%	Explore
epithelial cell	17 studies	44% ± 23%	Explore
plasmacytoid dendritic cell	15 studies	31% ± 11%	Explore
capillary endothelial cell	14 studies	40% ± 19%	Explore
myofibroblast cell	14 studies	65% ± 22%	Explore
dendritic cell	13 studies	39% ± 14%	Explore
endothelial cell of artery	12 studies	54% ± 21%	Explore
vein endothelial cell	12 studies	55% ± 19%	Explore
CD8-positive, alpha-beta T cell	11 studies	30% ± 12%	Explore
endothelial cell of vascular tree	11 studies	58% ± 15%	Explore
secretory cell	10 studies	42% ± 11%	Explore
glutamatergic neuron	10 studies	34% ± 16%	Explore
neuron	10 studies	55% ± 30%	Explore
mesothelial cell	10 studies	57% ± 24%	Explore
gamma-delta T cell	9 studies	21% ± 3%	Explore
myeloid cell	9 studies	35% ± 18%	Explore
type I pneumocyte	8 studies	43% ± 20%	Explore
abnormal cell	8 studies	55% ± 19%	Explore
retinal rod cell	8 studies	45% ± 24%	Explore
T cell	7 studies	20% ± 5%	Explore
type II pneumocyte	7 studies	43% ± 20%	Explore
goblet cell	7 studies	33% ± 15%	Explore
leukocyte	7 studies	24% ± 6%	Explore
ciliated cell	7 studies	34% ± 12%	Explore
alveolar macrophage	6 studies	40% ± 11%	Explore
club cell	6 studies	45% ± 18%	Explore
epithelial cell of proximal tubule	6 studies	36% ± 13%	Explore
enteroendocrine cell	6 studies	62% ± 16%	Explore
monocyte	6 studies	28% ± 12%	Explore
amacrine cell	6 studies	53% ± 24%	Explore
retinal ganglion cell	6 studies	46% ± 27%	Explore
retinal cone cell	6 studies	66% ± 28%	Explore
mature NK T cell	6 studies	26% ± 7%	Explore
ionocyte	5 studies	46% ± 16%	Explore
mononuclear phagocyte	5 studies	35% ± 16%	Explore
kidney loop of Henle epithelial cell	5 studies	29% ± 8%	Explore
progenitor cell	5 studies	46% ± 19%	Explore
enterocyte	5 studies	22% ± 5%	Explore
intestinal crypt stem cell	5 studies	23% ± 3%	Explore
transit amplifying cell	5 studies	27% ± 5%	Explore
retinal bipolar neuron	5 studies	53% ± 32%	Explore
OFF-bipolar cell	5 studies	43% ± 17%	Explore
ON-bipolar cell	5 studies	45% ± 17%	Explore
microglial cell	5 studies	22% ± 7%	Explore
neuroendocrine cell	5 studies	67% ± 24%	Explore
astrocyte	5 studies	37% ± 16%	Explore
effector memory CD8-positive, alpha-beta T cell	5 studies	22% ± 5%	Explore
hepatocyte	5 studies	53% ± 29%	Explore
hematopoietic stem cell	5 studies	29% ± 9%	Explore
mast cell	4 studies	23% ± 10%	Explore
exhausted T cell	4 studies	33% ± 15%	Explore
retina horizontal cell	4 studies	49% ± 19%	Explore
adventitial cell	4 studies	46% ± 8%	Explore
Mueller cell	4 studies	45% ± 19%	Explore
luminal hormone-sensing cell of mammary gland	4 studies	59% ± 3%	Explore
GABAergic neuron	4 studies	35% ± 5%	Explore
natural killer cell	4 studies	21% ± 6%	Explore
oligodendrocyte precursor cell	4 studies	38% ± 20%	Explore
interneuron	4 studies	37% ± 13%	Explore
hematopoietic precursor cell	3 studies	38% ± 26%	Explore
precursor cell	3 studies	59% ± 29%	Explore
respiratory goblet cell	3 studies	33% ± 11%	Explore
pancreatic A cell	3 studies	50% ± 29%	Explore
glomerular endothelial cell	3 studies	27% ± 8%	Explore
podocyte	3 studies	53% ± 8%	Explore
kidney distal convoluted tubule epithelial cell	3 studies	33% ± 17%	Explore
neural crest cell	3 studies	78% ± 3%	Explore
GABAergic amacrine cell	3 studies	34% ± 10%	Explore
glycinergic amacrine cell	3 studies	41% ± 11%	Explore
renal principal cell	3 studies	43% ± 10%	Explore
extravillous trophoblast	3 studies	36% ± 13%	Explore
mucus secreting cell	3 studies	39% ± 12%	Explore
rod bipolar cell	3 studies	63% ± 21%	Explore
regulatory T cell	3 studies	24% ± 6%	Explore
myoepithelial cell	3 studies	72% ± 9%	Explore
luminal cell of prostate epithelium	3 studies	71% ± 3%	Explore
megakaryocyte-erythroid progenitor cell	3 studies	45% ± 9%	Explore
glial cell	3 studies	49% ± 31%	Explore
keratinocyte	3 studies	48% ± 9%	Explore
erythrocyte	3 studies	40% ± 10%	Explore
progenitor cell of mammary luminal epithelium	3 studies	37% ± 5%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
lung	16 studies	40% ± 20%	Explore
brain	11 studies	25% ± 10%	Explore
eye	10 studies	43% ± 23%	Explore
intestine	9 studies	41% ± 22%	Explore
kidney	8 studies	31% ± 12%	Explore
liver	5 studies	35% ± 13%	Explore
placenta	4 studies	36% ± 6%	Explore
uterus	4 studies	60% ± 12%	Explore
breast	4 studies	46% ± 6%	Explore
pancreas	3 studies	44% ± 30%	Explore
prostate	3 studies	42% ± 5%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
ovary	100%	25033.39	180 / 180	100%	1355.63	430 / 430
liver	100%	29741.87	226 / 226	100%	915.87	405 / 406
skin	100%	13051.38	1807 / 1809	100%	653.05	470 / 472
prostate	100%	20420.11	244 / 245	100%	1131.00	500 / 502
thymus	100%	12378.96	653 / 653	99%	771.30	596 / 605
uterus	100%	32325.69	170 / 170	98%	982.48	451 / 459
breast	100%	14041.43	459 / 459	97%	802.05	1084 / 1118
kidney	100%	14729.47	89 / 89	96%	497.51	865 / 901
lung	100%	17955.73	578 / 578	96%	510.06	1105 / 1155
intestine	99%	20476.74	961 / 966	96%	480.77	505 / 527
adrenal gland	98%	8745.90	254 / 258	97%	809.90	222 / 230
esophagus	100%	20778.58	1445 / 1445	93%	446.97	170 / 183
brain	93%	13834.51	2454 / 2642	100%	912.06	705 / 705
bladder	100%	18890.19	21 / 21	91%	554.17	460 / 504
stomach	93%	11049.24	334 / 359	92%	414.34	263 / 286
pancreas	62%	2918.37	203 / 328	98%	529.97	174 / 178
adipose	100%	14421.64	1204 / 1204	0%	0	0 / 0
blood vessel	100%	24429.99	1335 / 1335	0%	0	0 / 0
tonsil	0%	0	0 / 0	98%	634.03	44 / 45
heart	96%	7189.46	829 / 861	0%	0	0 / 0
eye	0%	0	0 / 0	96%	347.28	77 / 80
spleen	96%	6096.35	231 / 241	0%	0	0 / 0
lymph node	0%	0	0 / 0	90%	232.77	26 / 29
muscle	44%	1870.70	350 / 803	0%	0	0 / 0
peripheral blood	33%	1689.29	307 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1