Name | Number of supported studies | Average coverage | |
---|---|---|---|
lung | 8 studies | 25% ± 4% | |
intestine | 7 studies | 25% ± 8% | |
peripheral blood | 6 studies | 28% ± 9% | |
uterus | 4 studies | 29% ± 16% | |
liver | 4 studies | 31% ± 19% | |
lymph node | 4 studies | 26% ± 8% | |
pancreas | 3 studies | 30% ± 9% | |
kidney | 3 studies | 20% ± 2% | |
eye | 3 studies | 29% ± 8% | |
breast | 3 studies | 20% ± 5% | |
prostate | 3 studies | 25% ± 3% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 7755.50 | 245 / 245 | 100% | 479.60 | 501 / 502 |
ovary | 100% | 5243.82 | 180 / 180 | 100% | 241.54 | 428 / 430 |
thymus | 99% | 3492.08 | 649 / 653 | 99% | 208.12 | 596 / 605 |
intestine | 100% | 4539.10 | 964 / 966 | 98% | 265.96 | 517 / 527 |
stomach | 97% | 4533.21 | 347 / 359 | 99% | 225.95 | 282 / 286 |
lung | 98% | 4332.33 | 569 / 578 | 97% | 371.61 | 1116 / 1155 |
brain | 95% | 2237.98 | 2522 / 2642 | 99% | 196.22 | 700 / 705 |
kidney | 100% | 6008.36 | 89 / 89 | 89% | 171.12 | 798 / 901 |
uterus | 99% | 5349.51 | 169 / 170 | 89% | 216.09 | 409 / 459 |
esophagus | 92% | 5239.04 | 1323 / 1445 | 96% | 397.87 | 175 / 183 |
pancreas | 97% | 2913.71 | 318 / 328 | 84% | 83.68 | 149 / 178 |
bladder | 100% | 4703.05 | 21 / 21 | 79% | 192.21 | 396 / 504 |
liver | 92% | 5429.15 | 209 / 226 | 83% | 107.29 | 337 / 406 |
skin | 91% | 4202.84 | 1638 / 1809 | 80% | 110.76 | 377 / 472 |
adrenal gland | 94% | 2307.11 | 243 / 258 | 58% | 41.78 | 133 / 230 |
breast | 98% | 2809.70 | 449 / 459 | 54% | 57.96 | 605 / 1118 |
lymph node | 0% | 0 | 0 / 0 | 100% | 260.02 | 29 / 29 |
muscle | 100% | 10084.53 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 4355.25 | 241 / 241 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 6804.68 | 1333 / 1335 | 0% | 0 | 0 / 0 |
adipose | 99% | 3605.46 | 1191 / 1204 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 96% | 246.26 | 43 / 45 |
heart | 92% | 3084.09 | 790 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 79% | 6585.17 | 735 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 45% | 30.84 | 36 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0009615 | Biological process | response to virus |
GO_0008284 | Biological process | positive regulation of cell population proliferation |
GO_0001822 | Biological process | kidney development |
GO_0042176 | Biological process | regulation of protein catabolic process |
GO_0008283 | Biological process | cell population proliferation |
GO_0006595 | Biological process | polyamine metabolic process |
GO_0033387 | Biological process | putrescine biosynthetic process from ornithine |
GO_0005575 | Cellular component | cellular_component |
GO_0005829 | Cellular component | cytosol |
GO_0005737 | Cellular component | cytoplasm |
GO_0004586 | Molecular function | ornithine decarboxylase activity |
GO_0042803 | Molecular function | protein homodimerization activity |
GO_0005515 | Molecular function | protein binding |
Gene name | ODC1 |
Protein name | Alternative protein ODC1 ornithine decarboxylase (EC 4.1.1.17) Ornithine decarboxylase (ODC) (EC 4.1.1.17) Ornithine decarboxylase 1 |
Synonyms | |
Description | FUNCTION: Catalyzes the first and rate-limiting step of polyamine biosynthesis that converts ornithine into putrescine, which is the precursor for the polyamines, spermidine and spermine. Polyamines are essential for cell proliferation and are implicated in cellular processes, ranging from DNA replication to apoptosis. . |
Accessions | A0A8V8TQA2 ENST00000699836.1 ENST00000443218.1 ENST00000699835.1 ENST00000405333.5 P11926 C9JG30 L8EA08 ENST00000234111.9 ENST00000446285.6 ENST00000443218.2 |