Name | Number of supported studies | Average coverage | |
---|---|---|---|
basal cell | 20 studies | 36% ± 18% | |
endothelial cell of lymphatic vessel | 18 studies | 29% ± 16% | |
epithelial cell | 16 studies | 43% ± 19% | |
endothelial cell | 16 studies | 29% ± 11% | |
secretory cell | 11 studies | 31% ± 11% | |
type I pneumocyte | 10 studies | 28% ± 12% | |
club cell | 10 studies | 28% ± 14% | |
respiratory goblet cell | 7 studies | 28% ± 14% | |
capillary endothelial cell | 7 studies | 29% ± 21% | |
goblet cell | 7 studies | 29% ± 16% | |
ciliated cell | 6 studies | 36% ± 16% | |
keratinocyte | 6 studies | 46% ± 19% | |
pro-B cell | 5 studies | 45% ± 15% | |
brush cell | 5 studies | 25% ± 9% | |
enterocyte | 5 studies | 22% ± 3% | |
immature B cell | 5 studies | 37% ± 18% | |
squamous epithelial cell | 4 studies | 63% ± 17% | |
conventional dendritic cell | 4 studies | 21% ± 5% | |
precursor B cell | 4 studies | 42% ± 21% | |
cardiac muscle cell | 4 studies | 18% ± 2% | |
abnormal cell | 4 studies | 21% ± 4% | |
luminal hormone-sensing cell of mammary gland | 4 studies | 29% ± 6% | |
luminal cell of prostate epithelium | 4 studies | 29% ± 9% | |
hematopoietic stem cell | 4 studies | 31% ± 20% | |
hematopoietic precursor cell | 3 studies | 39% ± 14% | |
hillock cell | 3 studies | 43% ± 12% | |
ionocyte | 3 studies | 35% ± 4% | |
non-classical monocyte | 3 studies | 24% ± 6% | |
vein endothelial cell | 3 studies | 27% ± 5% | |
extravillous trophoblast | 3 studies | 28% ± 3% | |
placental villous trophoblast | 3 studies | 21% ± 6% | |
B cell | 3 studies | 27% ± 9% | |
pericyte | 3 studies | 31% ± 16% | |
enteroendocrine cell | 3 studies | 27% ± 4% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
thymus | 94% | 14367.42 | 611 / 653 | 96% | 274.08 | 580 / 605 |
prostate | 79% | 10251.93 | 193 / 245 | 99% | 244.94 | 495 / 502 |
kidney | 91% | 15199.96 | 81 / 89 | 86% | 183.45 | 774 / 901 |
breast | 67% | 10044.73 | 306 / 459 | 98% | 352.78 | 1097 / 1118 |
lung | 64% | 7360.00 | 370 / 578 | 96% | 521.43 | 1107 / 1155 |
uterus | 57% | 7454.79 | 97 / 170 | 93% | 670.14 | 426 / 459 |
stomach | 43% | 5805.93 | 154 / 359 | 98% | 621.17 | 279 / 286 |
esophagus | 40% | 47745.37 | 578 / 1445 | 99% | 1741.92 | 182 / 183 |
intestine | 40% | 8169.31 | 385 / 966 | 98% | 532.10 | 519 / 527 |
ovary | 36% | 3940.08 | 65 / 180 | 100% | 431.27 | 428 / 430 |
bladder | 33% | 6188.00 | 7 / 21 | 96% | 558.60 | 486 / 504 |
pancreas | 16% | 1614.72 | 51 / 328 | 96% | 387.34 | 171 / 178 |
tonsil | 0% | 0 | 0 / 0 | 100% | 1013.29 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 422.74 | 1 / 1 |
skin | 72% | 94111.76 | 1305 / 1809 | 21% | 63.91 | 101 / 472 |
liver | 21% | 1960.88 | 47 / 226 | 65% | 105.98 | 262 / 406 |
heart | 79% | 12312.59 | 682 / 861 | 0% | 0 | 0 / 0 |
muscle | 52% | 5662.91 | 421 / 803 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 34% | 66.38 | 10 / 29 |
adipose | 28% | 2972.72 | 339 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 10% | 1170.85 | 134 / 1335 | 0% | 0 | 0 / 0 |
adrenal gland | 0% | 87.17 | 1 / 258 | 9% | 11.23 | 21 / 230 |
eye | 0% | 0 | 0 / 0 | 6% | 6.66 | 5 / 80 |
spleen | 4% | 335.44 | 9 / 241 | 0% | 0 | 0 / 0 |
peripheral blood | 2% | 182.38 | 15 / 929 | 0% | 0 | 0 / 0 |
brain | 0% | 6.43 | 2 / 2642 | 1% | 1.13 | 5 / 705 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0072659 | Biological process | protein localization to plasma membrane |
GO_0051091 | Biological process | positive regulation of DNA-binding transcription factor activity |
GO_0090263 | Biological process | positive regulation of canonical Wnt signaling pathway |
GO_0045766 | Biological process | positive regulation of angiogenesis |
GO_0001954 | Biological process | positive regulation of cell-matrix adhesion |
GO_0050982 | Biological process | detection of mechanical stimulus |
GO_0042307 | Biological process | positive regulation of protein import into nucleus |
GO_0060070 | Biological process | canonical Wnt signaling pathway |
GO_0043537 | Biological process | negative regulation of blood vessel endothelial cell migration |
GO_0086073 | Biological process | bundle of His cell-Purkinje myocyte adhesion involved in cell communication |
GO_0071603 | Biological process | endothelial cell-cell adhesion |
GO_0086091 | Biological process | regulation of heart rate by cardiac conduction |
GO_0002159 | Biological process | desmosome assembly |
GO_0098911 | Biological process | regulation of ventricular cardiac muscle cell action potential |
GO_0043588 | Biological process | skin development |
GO_0098609 | Biological process | cell-cell adhesion |
GO_0016477 | Biological process | cell migration |
GO_0042127 | Biological process | regulation of cell population proliferation |
GO_0071681 | Biological process | cellular response to indole-3-methanol |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0032993 | Cellular component | protein-DNA complex |
GO_0005856 | Cellular component | cytoskeleton |
GO_0005576 | Cellular component | extracellular region |
GO_0005915 | Cellular component | zonula adherens |
GO_0005886 | Cellular component | plasma membrane |
GO_0035580 | Cellular component | specific granule lumen |
GO_0030018 | Cellular component | Z disc |
GO_0009898 | Cellular component | cytoplasmic side of plasma membrane |
GO_0070062 | Cellular component | extracellular exosome |
GO_0016342 | Cellular component | catenin complex |
GO_0005882 | Cellular component | intermediate filament |
GO_0001533 | Cellular component | cornified envelope |
GO_0005911 | Cellular component | cell-cell junction |
GO_0005925 | Cellular component | focal adhesion |
GO_0030056 | Cellular component | hemidesmosome |
GO_0071665 | Cellular component | gamma-catenin-TCF7L2 complex |
GO_1904813 | Cellular component | ficolin-1-rich granule lumen |
GO_0005829 | Cellular component | cytosol |
GO_0005912 | Cellular component | adherens junction |
GO_0005737 | Cellular component | cytoplasm |
GO_0030057 | Cellular component | desmosome |
GO_0014704 | Cellular component | intercalated disc |
GO_0005634 | Cellular component | nucleus |
GO_0042803 | Molecular function | protein homodimerization activity |
GO_0016922 | Molecular function | nuclear receptor binding |
GO_0045294 | Molecular function | alpha-catenin binding |
GO_0086083 | Molecular function | cell adhesive protein binding involved in bundle of His cell-Purkinje myocyte communication |
GO_0106006 | Molecular function | cytoskeletal protein-membrane anchor activity |
GO_0019903 | Molecular function | protein phosphatase binding |
GO_0045296 | Molecular function | cadherin binding |
GO_0005198 | Molecular function | structural molecule activity |
GO_0050839 | Molecular function | cell adhesion molecule binding |
GO_0003713 | Molecular function | transcription coactivator activity |
GO_0005515 | Molecular function | protein binding |
Gene name | JUP |
Protein name | Alternative protein JUP Junction plakoglobin Junction plakoglobin (Catenin gamma) (Desmoplakin III) (Desmoplakin-3) |
Synonyms | DP3 CTNNG |
Description | FUNCTION: Common junctional plaque protein. The membrane-associated plaques are architectural elements in an important strategic position to influence the arrangement and function of both the cytoskeleton and the cells within the tissue. The presence of plakoglobin in both the desmosomes and in the intermediate junctions suggests that it plays a central role in the structure and function of submembranous plaques. Acts as a substrate for VE-PTP and is required by it to stimulate VE-cadherin function in endothelial cells. Can replace beta-catenin in E-cadherin/catenin adhesion complexes which are proposed to couple cadherins to the actin cytoskeleton (By similarity). . FUNCTION: Common junctional plaque protein. The membrane-associated plaques are architectural elements in an important strategic position to influence the arrangement and function of both the cytoskeleton and the cells within the tissue. The presence of plakoglobin in both the desmosomes and in the intermediate junctions suggests that it plays a central role in the structure and function of submembranous plaques. Acts as a substrate for VE-PTP and is required by it to stimulate VE-cadherin function in endothelial cells. Can replace beta-catenin in E-cadherin/catenin adhesion complexes which are proposed to couple cadherins to the actin cytoskeleton. . FUNCTION: Common junctional plaque protein. The membrane-associated plaques are architectural elements in an important strategic position to influence the arrangement and function of both the cytoskeleton and the cells within the tissue. The presence of plakoglobin in both the desmosomes and in the intermediate junctions suggests that it plays a central role in the structure and function of submembranous plaques. Acts as a substrate for VE-PTP and is required by it to stimulate VE-cadherin function in endothelial cells. Can replace beta-catenin in E-cadherin/catenin adhesion complexes which are proposed to couple cadherins to the actin cytoskeleton. . FUNCTION: Common junctional plaque protein. The membrane-associated plaques are architectural elements in an important strategic position to influence the arrangement and function of both the cytoskeleton and the cells within the tissue. The presence of plakoglobin in both the desmosomes and in the intermediate junctions suggests that it plays a central role in the structure and function of submembranous plaques. Acts as a substrate for VE-PTP and is required by it to stimulate VE-cadherin function in endothelial cells. Can replace beta-catenin in E-cadherin/catenin adhesion complexes which are proposed to couple cadherins to the actin cytoskeleton. . FUNCTION: Common junctional plaque protein. The membrane-associated plaques are architectural elements in an important strategic position to influence the arrangement and function of both the cytoskeleton and the cells within the tissue. The presence of plakoglobin in both the desmosomes and in the intermediate junctions suggests that it plays a central role in the structure and function of submembranous plaques. Acts as a substrate for VE-PTP and is required by it to stimulate VE-cadherin function in endothelial cells. Can replace beta-catenin in E-cadherin/catenin adhesion complexes which are proposed to couple cadherins to the actin cytoskeleton. . FUNCTION: Common junctional plaque protein. The membrane-associated plaques are architectural elements in an important strategic position to influence the arrangement and function of both the cytoskeleton and the cells within the tissue. The presence of plakoglobin in both the desmosomes and in the intermediate junctions suggests that it plays a central role in the structure and function of submembranous plaques. Acts as a substrate for VE-PTP and is required by it to stimulate VE-cadherin function in endothelial cells. Can replace beta-catenin in E-cadherin/catenin adhesion complexes which are proposed to couple cadherins to the actin cytoskeleton. . FUNCTION: Common junctional plaque protein. The membrane-associated plaques are architectural elements in an important strategic position to influence the arrangement and function of both the cytoskeleton and the cells within the tissue. The presence of plakoglobin in both the desmosomes and in the intermediate junctions suggests that it plays a central role in the structure and function of submembranous plaques. Acts as a substrate for VE-PTP and is required by it to stimulate VE-cadherin function in endothelial cells. Can replace beta-catenin in E-cadherin/catenin adhesion complexes which are proposed to couple cadherins to the actin cytoskeleton. . |
Accessions | ENST00000420370.5 C9JTX4 ENST00000424457.5 A0A0S2Z495 P14923 L8EAA6 C9J826 C9JKY1 C9JPI2 K7ERP3 ENST00000437369.5 ENST00000591690.5 A0A0S2Z487 ENST00000393931.8 ENST00000310706.9 ENST00000449889.5 ENST00000437187.5 ENST00000393930.5 C9JK18 |