Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 3633.50 | 459 / 459 | 100% | 65.27 | 1118 / 1118 |
esophagus | 100% | 2624.59 | 1445 / 1445 | 100% | 40.16 | 183 / 183 |
liver | 100% | 2805.17 | 226 / 226 | 100% | 40.08 | 406 / 406 |
lung | 100% | 3638.75 | 578 / 578 | 100% | 47.17 | 1155 / 1155 |
ovary | 100% | 3407.17 | 180 / 180 | 100% | 47.01 | 430 / 430 |
pancreas | 100% | 1941.63 | 328 / 328 | 100% | 39.13 | 178 / 178 |
stomach | 100% | 2276.95 | 359 / 359 | 100% | 40.41 | 286 / 286 |
uterus | 100% | 3259.24 | 170 / 170 | 100% | 39.17 | 459 / 459 |
intestine | 100% | 3085.49 | 966 / 966 | 100% | 41.76 | 526 / 527 |
bladder | 100% | 2963.19 | 21 / 21 | 100% | 41.29 | 503 / 504 |
skin | 100% | 2856.79 | 1809 / 1809 | 100% | 40.76 | 471 / 472 |
kidney | 100% | 2280.67 | 89 / 89 | 100% | 46.81 | 898 / 901 |
prostate | 100% | 2695.60 | 245 / 245 | 100% | 38.48 | 500 / 502 |
thymus | 100% | 2666.81 | 653 / 653 | 100% | 41.61 | 602 / 605 |
adrenal gland | 100% | 4044.87 | 258 / 258 | 99% | 37.47 | 228 / 230 |
brain | 98% | 1795.18 | 2601 / 2642 | 100% | 29.18 | 705 / 705 |
adipose | 100% | 3924.44 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 2935.65 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 42.25 | 29 / 29 |
muscle | 100% | 3651.22 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 4186.67 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 39.62 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 33.07 | 1 / 1 |
heart | 98% | 2144.11 | 845 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 98% | 2258.09 | 909 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 95% | 34.26 | 76 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006986 | Biological process | response to unfolded protein |
GO_0030970 | Biological process | retrograde protein transport, ER to cytosol |
GO_0045184 | Biological process | establishment of protein localization |
GO_0071218 | Biological process | cellular response to misfolded protein |
GO_0031648 | Biological process | protein destabilization |
GO_0030968 | Biological process | endoplasmic reticulum unfolded protein response |
GO_0031398 | Biological process | positive regulation of protein ubiquitination |
GO_0036503 | Biological process | ERAD pathway |
GO_0043161 | Biological process | proteasome-mediated ubiquitin-dependent protein catabolic process |
GO_0036502 | Cellular component | Derlin-1-VIMP complex |
GO_0016020 | Cellular component | membrane |
GO_0005789 | Cellular component | endoplasmic reticulum membrane |
GO_0005769 | Cellular component | early endosome |
GO_0044322 | Cellular component | endoplasmic reticulum quality control compartment |
GO_0005783 | Cellular component | endoplasmic reticulum |
GO_0005770 | Cellular component | late endosome |
GO_0036513 | Cellular component | Derlin-1 retrotranslocation complex |
GO_0038023 | Molecular function | signaling receptor activity |
GO_0044877 | Molecular function | protein-containing complex binding |
GO_0031625 | Molecular function | ubiquitin protein ligase binding |
GO_0042802 | Molecular function | identical protein binding |
GO_0002020 | Molecular function | protease binding |
GO_0042288 | Molecular function | MHC class I protein binding |
GO_0005047 | Molecular function | signal recognition particle binding |
GO_0051117 | Molecular function | ATPase binding |
GO_0005515 | Molecular function | protein binding |
GO_1990381 | Molecular function | ubiquitin-specific protease binding |
Gene name | DERL1 |
Protein name | Der1-like domain family, member 1, isoform CRA_b (cDNA, FLJ94261) Derlin Derlin-1 (Degradation in endoplasmic reticulum protein 1) (DERtrin-1) (Der1-like protein 1) |
Synonyms | DER1 UNQ243/PRO276 hCG_2009023 |
Description | FUNCTION: Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins . Forms homotetramers which encircle a large channel traversing the endoplasmic reticulum (ER) membrane . This allows the retrotranslocation of misfolded proteins from the ER into the cytosol where they are ubiquitinated and degraded by the proteasome . The channel has a lateral gate within the membrane which provides direct access to membrane proteins with no need to reenter the ER lumen first . May mediate the interaction between VCP and the misfolded protein . Also involved in endoplasmic reticulum stress-induced pre-emptive quality control, a mechanism that selectively attenuates the translocation of newly synthesized proteins into the endoplasmic reticulum and reroutes them to the cytosol for proteasomal degradation . By controlling the steady-state expression of the IGF1R receptor, indirectly regulates the insulin-like growth factor receptor signaling pathway . .; FUNCTION: (Microbial infection) In case of infection by cytomegaloviruses, it plays a central role in the export from the ER and subsequent degradation of MHC class I heavy chains via its interaction with US11 viral protein, which recognizes and associates with MHC class I heavy chains. Also participates in the degradation process of misfolded cytomegalovirus US2 protein. . FUNCTION: Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome. . FUNCTION: Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome. . |
Accessions | ENST00000523036.1 ENST00000405944.7 [Q9BUN8-2] B2R979 E5RGY0 Q9BUN8 ENST00000519018.5 ENST00000419562.6 ENST00000259512.9 [Q9BUN8-1] B4E1G1 |